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Author SHA1 Message Date
dependabot[bot]
44c739fe15
Bump docutils from 0.19 to 0.20.1 in /dependencies/python (#4785) 
Bumps [docutils](https://docutils.sourceforge.io/) from 0.19 to 0.20.1.

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 2023-10-24 23:50:46 +00:00
dependabot[bot]
397b14da44
Bump jupyter-core from 5.3.0 to 5.3.1 in /dependencies/python (#4658) 
Bumps [jupyter-core](https://github.com/jupyter/jupyter_core) from 5.3.0 to 5.3.1.
- [Release notes](https://github.com/jupyter/jupyter_core/releases)
- [Changelog](https://github.com/jupyter/jupyter_core/blob/main/CHANGELOG.md)
- [Commits](https://github.com/jupyter/jupyter_core/compare/v5.3.0...v5.3.1)

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 2023-09-21 06:56:59 +00:00
dependabot[bot]
4eadc5800b
Bump configargparse from 1.5.3 to 1.7 in /dependencies/python (#4659) 
Bumps [configargparse](https://github.com/bw2/ConfigArgParse) from 1.5.3 to 1.7.
- [Release notes](https://github.com/bw2/ConfigArgParse/releases)
- [Commits](https://github.com/bw2/ConfigArgParse/compare/v1.5.3...1.7)

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 2023-09-18 19:04:00 +00:00
dependabot[bot]
a6cc955aed
Bump charset-normalizer from 3.1.0 to 3.2.0 in /dependencies/python (#4583) 
Bumps [charset-normalizer](https://github.com/Ousret/charset_normalizer) from 3.1.0 to 3.2.0.
- [Release notes](https://github.com/Ousret/charset_normalizer/releases)
- [Changelog](https://github.com/Ousret/charset_normalizer/blob/master/CHANGELOG.md)
- [Commits](https://github.com/Ousret/charset_normalizer/compare/3.1.0...3.2.0)

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 2023-08-22 15:37:03 +00:00
dependabot[bot]
24891bf279
Bump fastjsonschema from 2.16.3 to 2.18.0 in /dependencies/python (#4509) 
Bumps [fastjsonschema](https://github.com/horejsek/python-fastjsonschema) from 2.16.3 to 2.18.0.
- [Changelog](https://github.com/horejsek/python-fastjsonschema/blob/master/CHANGELOG.txt)
- [Commits](https://github.com/horejsek/python-fastjsonschema/compare/v2.16.3...v2.18.0)

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 2023-08-17 15:03:13 +00:00
dependabot[bot]
38acc98590
Bump jsonschema from 4.17.3 to 4.19.0 in /dependencies/python (#4530) 
Bumps [jsonschema](https://github.com/python-jsonschema/jsonschema) from 4.17.3 to 4.19.0.
- [Release notes](https://github.com/python-jsonschema/jsonschema/releases)
- [Changelog](https://github.com/python-jsonschema/jsonschema/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/python-jsonschema/jsonschema/compare/v4.17.3...v4.19.0)

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 2023-08-16 18:07:51 +00:00
dependabot[bot]
287003a823
Bump dpath from 2.1.5 to 2.1.6 in /dependencies/python (#4336) 
Bumps [dpath](https://github.com/dpath-maintainers/dpath-python) from 2.1.5 to 2.1.6.
- [Release notes](https://github.com/dpath-maintainers/dpath-python/releases)
- [Commits](https://github.com/dpath-maintainers/dpath-python/compare/v2.1.5...v2.1.6)

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 2023-08-10 22:20:01 +00:00
dependabot[bot]
1d0a3be314
Bump requests from 2.28.2 to 2.31.0 in /dependencies/python (#4343) 2023-07-23 08:48:14 -07:00
Philip Mallegol-Hansen
ddb1589d62
Bumps PyYAML to 6.0.1 (#4497) 
There's some conflict where PyYAML 6.0.0 and Cython 3.0 do not play well together, this version fixes that.
 2023-07-21 15:04:44 -07:00
dependabot[bot]
d428480827
Bump snakemake from 7.28.3 to 7.30.1 in /dependencies/python (#4411) 
Bumps [snakemake](https://github.com/snakemake/snakemake) from 7.28.3 to 7.30.1.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](https://github.com/snakemake/snakemake/compare/v7.28.3...v7.30.1)

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 2023-06-30 00:30:42 +00:00
dependabot[bot]
089c732c47
Bump snakemake from 7.25.0 to 7.28.3 in /dependencies/python (#4390) 
Bumps [snakemake](https://github.com/snakemake/snakemake) from 7.25.0 to 7.28.3.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](https://github.com/snakemake/snakemake/compare/v7.25.0...v7.28.3)

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 2023-06-19 08:24:30 -07:00
dependabot[bot]
db30455cd7
Bump psutil from 5.9.4 to 5.9.5 in /dependencies/python (#4128) 
* Bump psutil from 5.9.4 to 5.9.5 in /dependencies/python

Bumps [psutil](https://github.com/giampaolo/psutil) from 5.9.4 to 5.9.5.
- [Release notes](https://github.com/giampaolo/psutil/releases)
- [Changelog](https://github.com/giampaolo/psutil/blob/master/HISTORY.rst)
- [Commits](https://github.com/giampaolo/psutil/compare/release-5.9.4...release-5.9.5)

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* Update dependencies/python/snakemake.txt

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 2023-05-25 15:33:01 -07:00
dependabot[bot]
8a89630159
Bump platformdirs from 3.2.0 to 3.5.1 in /dependencies/python (#4200) 
Bumps [platformdirs](https://github.com/platformdirs/platformdirs) from 3.2.0 to 3.5.1.
- [Release notes](https://github.com/platformdirs/platformdirs/releases)
- [Changelog](https://github.com/platformdirs/platformdirs/blob/main/CHANGES.rst)
- [Commits](https://github.com/platformdirs/platformdirs/compare/3.2.0...3.5.1)

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 2023-05-23 12:39:48 -07:00
Super-Linter Automation
024514974a Update Python dependencies 2023-04-16 22:23:13 -04:00
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21a606688b Update Python dependencies 2023-04-10 14:51:50 -04:00
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fd53b78588 Update Python dependencies 2023-01-16 20:07:10 -05:00
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70bb091689 Update Python dependencies 2023-01-03 11:31:26 -05:00
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5451094101 Update Python dependencies 2022-12-26 09:36:28 -05:00
Super-Linter Automation
f5f9a755e7 Update Python dependencies 2022-12-20 11:01:54 -05:00
dependabot[bot]
8ddf7760f8
Bump nbformat from 5.6.1 to 5.7.0 in /dependencies/python (#3444) 
Bumps [nbformat]() from 5.6.1 to 5.7.0.

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 2022-10-10 13:31:30 -05:00
github-actions[bot]
4e5b33defa
Update Python dependencies (#3425) 
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 2022-10-10 12:35:54 -05:00
Super-Linter Automation
71fe17b02c Update Python dependencies 2022-10-02 21:41:42 -05:00
dependabot[bot]
f79c9e933c
Bump nbformat from 5.6.0 to 5.6.1 in /dependencies/python (#3354) 
Bumps [nbformat]() from 5.6.0 to 5.6.1.

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 2022-09-27 09:24:19 +00:00
dependabot[bot]
abc2f61dd4
Bump snakemake from 7.14.0 to 7.14.1 in /dependencies/python (#3355) 
Bumps [snakemake](https://github.com/snakemake/snakemake) from 7.14.0 to 7.14.1.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](https://github.com/snakemake/snakemake/compare/v7.14.0...v7.14.1)

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 2022-09-27 08:37:15 +00:00
github-actions[bot]
4afd71e176
Update Python dependencies (#3348) 
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 2022-09-26 13:48:52 -05:00
github-actions[bot]
f5193dd525
Update Python dependencies (#3229) 
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 2022-08-15 09:12:35 -05:00
github-actions[bot]
2b0d830b1f
Update Python dependencies (#3185) 
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 2022-08-01 13:16:46 -05:00
github-actions[bot]
da1c6a1cff
Update Python dependencies (#3167) 
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 2022-07-25 08:29:37 -05:00
github-actions[bot]
4480c1e56c
Update Python dependencies (#3124) 
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 2022-07-11 10:07:29 -05:00
github-actions[bot]
8c67cfdae6
Update Python dependencies (#3102) 
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 2022-07-06 13:07:24 -05:00
github-actions[bot]
45da75044f
Update Python dependencies (#3047) 
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 2022-06-20 09:29:41 -05:00
github-actions[bot]
359371f18c
Update Python dependencies (#3017) 
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 2022-06-13 13:54:01 -05:00
github-actions[bot]
dfad0c8b83
Update Python dependencies (#3000) 
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 2022-06-06 08:12:54 -05:00
dependabot[bot]
adba928f1f
Bump snakemake from 7.8.0 to 7.8.1 in /dependencies/python (#2991) 
Bumps [snakemake](https://github.com/snakemake/snakemake) from 7.8.0 to 7.8.1.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](https://github.com/snakemake/snakemake/compare/v7.8.0...v7.8.1)

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 2022-05-31 13:09:56 -05:00
github-actions[bot]
d152bd07a3
Update Python dependencies (#2966) 
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 2022-05-31 08:29:24 -05:00
github-actions[bot]
0faf83234e
Weekly Python Updates (#2922) 
* Update Python dependencies

* fix it

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 2022-05-23 13:26:07 -05:00
github-actions[bot]
f26cfb25dc
Update Python dependencies (#2895) 
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 2022-05-16 12:55:12 -05:00
Super-Linter Automation
1f1e382781 Update Python dependencies 2022-05-09 01:38:28 -04:00
dependabot[bot]
4c791239f9
Bump wrapt from 1.14.0 to 1.14.1 in /dependencies/python (#2867) 
Bumps [wrapt](https://github.com/GrahamDumpleton/wrapt) from 1.14.0 to 1.14.1.
- [Release notes](https://github.com/GrahamDumpleton/wrapt/releases)
- [Changelog](https://github.com/GrahamDumpleton/wrapt/blob/develop/docs/changes.rst)
- [Commits](https://github.com/GrahamDumpleton/wrapt/compare/1.14.0...1.14.1)

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 2022-05-02 10:40:16 -05:00
github-actions[bot]
651cff3720
Update Python dependencies (#2852) 
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 2022-05-02 09:22:46 -05:00
dependabot[bot]
c5c1f15247
Bump jupyter-core from 4.9.2 to 4.10.0 in /dependencies/python (#2804) 
Bumps [jupyter-core](https://github.com/jupyter/jupyter_core) from 4.9.2 to 4.10.0.
- [Release notes](https://github.com/jupyter/jupyter_core/releases)
- [Changelog](https://github.com/jupyter/jupyter_core/blob/main/docs/changelog.rst)
- [Commits](https://github.com/jupyter/jupyter_core/compare/4.9.2...4.10.0)

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 2022-04-20 11:11:16 -07:00
github-actions[bot]
8a14c40fe8
Update Python dependencies (#2788) 
Co-authored-by: Super-Linter Automation <noreply@github.com>
 2022-04-19 10:00:30 -07:00
dependabot[bot]
1b0a2965ad
Bump yte from 1.2.0 to 1.2.1 in /dependencies/python (#2775) 
Bumps [yte](https://github.com/koesterlab/yte) from 1.2.0 to 1.2.1.
- [Release notes](https://github.com/koesterlab/yte/releases)
- [Changelog](https://github.com/koesterlab/yte/blob/main/CHANGELOG.md)
- [Commits](https://github.com/koesterlab/yte/compare/v1.2.0...v1.2.1)

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401a175228 Update Python dependencies 2022-04-04 09:32:17 -04:00
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9f875389ff Update Python dependencies 2022-03-28 09:35:32 -04:00
github-actions[bot]
2bcdb3d248
Update Python dependencies (#2644) 
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 2022-03-21 13:09:41 -05:00
dependabot[bot]
6abfa2b339
Bump snakemake from 7.1.0 to 7.2.1 in /dependencies/python (#2637) 
Bumps [snakemake](https://github.com/snakemake/snakemake) from 7.1.0 to 7.2.1.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](https://github.com/snakemake/snakemake/compare/v7.1.0...v7.2.1)

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github-actions[bot]
07b2cc9eab
Update Python dependencies (#2616) 
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 2022-03-14 08:54:52 -05:00