Update Python dependencies

dependencies/python/ansible-lint.txt

@@ -1,35 +1,30 @@
-ansible-compat==2.2.1
-ansible-core==2.13.4
-ansible-lint==6.8.0
+ansible-compat==2.2.7
+ansible-core==2.14.1
+ansible-lint==6.10.0
 attrs==22.1.0
-black==22.10.0
+black==22.12.0
 bracex==2.3.post1
 cffi==1.15.1
 click==8.1.3
 commonmark==0.9.1
-cryptography==38.0.1
-filelock==3.8.0
-importlib-resources==5.10.0
+cryptography==38.0.4
+filelock==3.8.2
 Jinja2==3.1.2
-jsonschema==4.16.0
+jsonschema==4.17.3
 MarkupSafe==2.1.1
 mypy-extensions==0.4.3
-packaging==21.3
-pathspec==0.10.1
-pkgutil_resolve_name==1.3.10
-platformdirs==2.5.2
+packaging==22.0
+pathspec==0.10.3
+platformdirs==2.6.0
 pycparser==2.21
 Pygments==2.13.0
-pyparsing==3.0.9
-pyrsistent==0.18.1
+pyrsistent==0.19.2
 PyYAML==6.0
 resolvelib==0.8.1
 rich==12.6.0
 ruamel.yaml==0.17.21
-ruamel.yaml.clib==0.2.6
-subprocess-tee==0.3.5
+ruamel.yaml.clib==0.2.7
+subprocess-tee==0.4.1
 tomli==2.0.1
-typing_extensions==4.4.0
 wcmatch==8.4.1
 yamllint==1.28.0
-zipp==3.9.0

dependencies/python/black.txt

@@ -1,7 +1,6 @@
-black==22.10.0
+black==22.12.0
 click==8.1.3
 mypy-extensions==0.4.3
-pathspec==0.10.1
-platformdirs==2.5.2
+pathspec==0.10.3
+platformdirs==2.6.0
 tomli==2.0.1
-typing_extensions==4.4.0

dependencies/python/cfn-lint.txt

@@ -1,21 +1,21 @@
 attrs==22.1.0
-aws-sam-translator==1.52.0
-boto3==1.24.89
-botocore==1.27.89
-cfn-lint==0.67.0
+aws-sam-translator==1.55.0
+boto3==1.26.33
+botocore==1.29.33
+cfn-lint==0.72.5
 jmespath==1.0.1
 jschema-to-python==1.2.3
 jsonpatch==1.32
-jsonpickle==2.2.0
+jsonpickle==3.0.1
 jsonpointer==2.3
 jsonschema==3.2.0
 junit-xml==1.9
-networkx==2.8.7
-pbr==5.10.0
-pyrsistent==0.18.1
+networkx==2.8.8
+pbr==5.11.0
+pyrsistent==0.19.2
 python-dateutil==2.8.2
 PyYAML==6.0
 s3transfer==0.6.0
 sarif-om==1.0.4
 six==1.16.0
-urllib3==1.26.12
+urllib3==1.26.13

dependencies/python/flake8.txt

@@ -1,4 +1,4 @@
-flake8==5.0.4
+flake8==6.0.0
 mccabe==0.7.0
-pycodestyle==2.9.1
-pyflakes==2.5.0
+pycodestyle==2.10.0
+pyflakes==3.0.1

dependencies/python/isort.txt

@@ -1 +1 @@
-isort==5.10.1
+isort==5.11.3

dependencies/python/mypy.txt

@@ -1,4 +1,4 @@
-mypy==0.982
+mypy==0.991
 mypy-extensions==0.4.3
 tomli==2.0.1
 typing_extensions==4.4.0

dependencies/python/pylint.txt

@@ -1,11 +1,10 @@
-astroid==2.12.11
-dill==0.3.5.1
-isort==5.10.1
-lazy-object-proxy==1.7.1
+astroid==2.12.13
+dill==0.3.6
+isort==5.11.3
+lazy-object-proxy==1.8.0
 mccabe==0.7.0
-platformdirs==2.5.2
-pylint==2.15.4
+platformdirs==2.6.0
+pylint==2.15.9
 tomli==2.0.1
-tomlkit==0.11.5
-typing_extensions==4.4.0
+tomlkit==0.11.6
 wrapt==1.14.1

dependencies/python/snakefmt.txt

@@ -1,11 +1,8 @@
-black==22.10.0
+black==22.12.0
 click==8.1.3
-importlib-metadata==1.7.0
 mypy-extensions==0.4.3
-pathspec==0.10.1
-platformdirs==2.5.2
-snakefmt==0.6.1
+pathspec==0.10.3
+platformdirs==2.6.0
+snakefmt==0.8.0
 toml==0.10.2
 tomli==2.0.1
-typing_extensions==4.4.0
-zipp==3.9.0

dependencies/python/snakemake.txt

@@ -1,39 +1,37 @@
 appdirs==1.4.4
 attrs==22.1.0
-certifi==2022.9.24
+certifi==2022.12.7
 charset-normalizer==2.1.1
 ConfigArgParse==1.5.3
 connection-pool==0.0.3
 datrie==0.8.2
 docutils==0.19
-dpath==2.0.6
+dpath==2.1.3
 fastjsonschema==2.16.2
-gitdb==4.0.9
-GitPython==3.1.28
+gitdb==4.0.10
+GitPython==3.1.29
 idna==3.4
-importlib-resources==5.10.0
 Jinja2==3.1.2
-jsonschema==4.16.0
-jupyter-core==4.11.1
+jsonschema==4.17.3
+jupyter_core==5.1.0
 MarkupSafe==2.1.1
-nbformat==5.7.0
-pkgutil_resolve_name==1.3.10
+nbformat==5.7.1
 plac==1.3.5
-psutil==5.9.2
-PuLP==2.6.0
-pyrsistent==0.18.1
+platformdirs==2.6.0
+psutil==5.9.4
+PuLP==2.7.0
+pyrsistent==0.19.2
 PyYAML==6.0
-ratelimiter==1.2.0.post0
 requests==2.28.1
-reretry==0.11.1
-smart-open==6.2.0
+reretry==0.11.8
+smart-open==6.3.0
 smmap==5.0.0
-snakemake==7.15.2
+snakemake==7.19.1
 stopit==1.1.2
 tabulate==0.9.0
+throttler==1.2.2
 toposort==1.7
-traitlets==5.4.0
-urllib3==1.26.12
+traitlets==5.8.0
+urllib3==1.26.13
 wrapt==1.14.1
 yte==1.5.1
-zipp==3.9.0

dependencies/python/sqlfluff.txt

@@ -1,22 +1,21 @@
 appdirs==1.4.4
 attrs==22.1.0
-chardet==5.0.0
+chardet==5.1.0
 click==8.1.3
-colorama==0.4.5
-diff-cover==7.0.1
+colorama==0.4.6
+diff-cover==7.3.0
+exceptiongroup==1.0.4
 iniconfig==1.1.1
 Jinja2==3.1.2
 MarkupSafe==2.1.1
-packaging==21.3
-pathspec==0.10.1
+packaging==22.0
+pathspec==0.10.3
 pluggy==1.0.0
-py==1.11.0
 Pygments==2.13.0
-pyparsing==3.0.9
-pytest==7.1.3
+pytest==7.2.0
 PyYAML==6.0
-regex==2022.9.13
-sqlfluff==1.3.2
+regex==2022.10.31
+sqlfluff==1.4.5
 tblib==1.7.0
 toml==0.10.2
 tomli==2.0.1

dependencies/python/yamllint.txt

@@ -1,3 +1,3 @@
-pathspec==0.10.1
+pathspec==0.10.3
 PyYAML==6.0
 yamllint==1.28.0