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48 commits

Author SHA1 Message Date
Super-Linter Automation
21a606688b Update Python dependencies 2023-04-10 14:51:50 -04:00
Super-Linter Automation
67f15bf54c Update Python dependencies 2023-01-22 18:53:51 -05:00
Super-Linter Automation
fd53b78588 Update Python dependencies 2023-01-16 20:07:10 -05:00
Super-Linter Automation
42f676bd3e Update Python dependencies 2023-01-09 09:40:39 -05:00
Super-Linter Automation
70bb091689 Update Python dependencies 2023-01-03 11:31:26 -05:00
Super-Linter Automation
5451094101 Update Python dependencies 2022-12-26 09:36:28 -05:00
Super-Linter Automation
f5f9a755e7 Update Python dependencies 2022-12-20 11:01:54 -05:00
dependabot[bot]
8ddf7760f8
Bump nbformat from 5.6.1 to 5.7.0 in /dependencies/python (#3444) 
Bumps [nbformat]() from 5.6.1 to 5.7.0.

---
updated-dependencies:
- dependency-name: nbformat
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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 2022-10-10 13:31:30 -05:00
github-actions[bot]
4e5b33defa
Update Python dependencies (#3425) 
Co-authored-by: Super-Linter Automation <noreply@github.com>
 2022-10-10 12:35:54 -05:00
Super-Linter Automation
71fe17b02c Update Python dependencies 2022-10-02 21:41:42 -05:00
dependabot[bot]
f79c9e933c
Bump nbformat from 5.6.0 to 5.6.1 in /dependencies/python (#3354) 
Bumps [nbformat]() from 5.6.0 to 5.6.1.

---
updated-dependencies:
- dependency-name: nbformat
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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 2022-09-27 09:24:19 +00:00
dependabot[bot]
abc2f61dd4
Bump snakemake from 7.14.0 to 7.14.1 in /dependencies/python (#3355) 
Bumps [snakemake](https://github.com/snakemake/snakemake) from 7.14.0 to 7.14.1.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](https://github.com/snakemake/snakemake/compare/v7.14.0...v7.14.1)

---
updated-dependencies:
- dependency-name: snakemake
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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 2022-09-27 08:37:15 +00:00
github-actions[bot]
4afd71e176
Update Python dependencies (#3348) 
Co-authored-by: Super-Linter Automation <noreply@github.com>
Co-authored-by: Marco Ferrari <ferrari.marco@gmail.com>
 2022-09-26 13:48:52 -05:00
github-actions[bot]
f5193dd525
Update Python dependencies (#3229) 
Co-authored-by: Super-Linter Automation <noreply@github.com>
 2022-08-15 09:12:35 -05:00
github-actions[bot]
2b0d830b1f
Update Python dependencies (#3185) 
Co-authored-by: Super-Linter Automation <noreply@github.com>
 2022-08-01 13:16:46 -05:00
github-actions[bot]
da1c6a1cff
Update Python dependencies (#3167) 
Co-authored-by: Super-Linter Automation <noreply@github.com>
 2022-07-25 08:29:37 -05:00
github-actions[bot]
4480c1e56c
Update Python dependencies (#3124) 
Co-authored-by: Super-Linter Automation <noreply@github.com>
 2022-07-11 10:07:29 -05:00
github-actions[bot]
8c67cfdae6
Update Python dependencies (#3102) 
Co-authored-by: Super-Linter Automation <noreply@github.com>
 2022-07-06 13:07:24 -05:00
github-actions[bot]
45da75044f
Update Python dependencies (#3047) 
Co-authored-by: Super-Linter Automation <noreply@github.com>
 2022-06-20 09:29:41 -05:00
github-actions[bot]
359371f18c
Update Python dependencies (#3017) 
Co-authored-by: Super-Linter Automation <noreply@github.com>
 2022-06-13 13:54:01 -05:00
github-actions[bot]
dfad0c8b83
Update Python dependencies (#3000) 
Co-authored-by: Super-Linter Automation <noreply@github.com>
 2022-06-06 08:12:54 -05:00
dependabot[bot]
adba928f1f
Bump snakemake from 7.8.0 to 7.8.1 in /dependencies/python (#2991) 
Bumps [snakemake](https://github.com/snakemake/snakemake) from 7.8.0 to 7.8.1.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](https://github.com/snakemake/snakemake/compare/v7.8.0...v7.8.1)

---
updated-dependencies:
- dependency-name: snakemake
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2022-05-31 13:09:56 -05:00
github-actions[bot]
d152bd07a3
Update Python dependencies (#2966) 
Co-authored-by: Super-Linter Automation <noreply@github.com>
 2022-05-31 08:29:24 -05:00
github-actions[bot]
0faf83234e
Weekly Python Updates (#2922) 
* Update Python dependencies

* fix it

Co-authored-by: Super-Linter Automation <noreply@github.com>
Co-authored-by: Admiral Awkbar <admiralawkbar@github.com>
 2022-05-23 13:26:07 -05:00
github-actions[bot]
f26cfb25dc
Update Python dependencies (#2895) 
Co-authored-by: Super-Linter Automation <noreply@github.com>
 2022-05-16 12:55:12 -05:00
Super-Linter Automation
1f1e382781 Update Python dependencies 2022-05-09 01:38:28 -04:00
dependabot[bot]
4c791239f9
Bump wrapt from 1.14.0 to 1.14.1 in /dependencies/python (#2867) 
Bumps [wrapt](https://github.com/GrahamDumpleton/wrapt) from 1.14.0 to 1.14.1.
- [Release notes](https://github.com/GrahamDumpleton/wrapt/releases)
- [Changelog](https://github.com/GrahamDumpleton/wrapt/blob/develop/docs/changes.rst)
- [Commits](https://github.com/GrahamDumpleton/wrapt/compare/1.14.0...1.14.1)

---
updated-dependencies:
- dependency-name: wrapt
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2022-05-02 10:40:16 -05:00
github-actions[bot]
651cff3720
Update Python dependencies (#2852) 
Co-authored-by: Super-Linter Automation <noreply@github.com>
 2022-05-02 09:22:46 -05:00
dependabot[bot]
c5c1f15247
Bump jupyter-core from 4.9.2 to 4.10.0 in /dependencies/python (#2804) 
Bumps [jupyter-core](https://github.com/jupyter/jupyter_core) from 4.9.2 to 4.10.0.
- [Release notes](https://github.com/jupyter/jupyter_core/releases)
- [Changelog](https://github.com/jupyter/jupyter_core/blob/main/docs/changelog.rst)
- [Commits](https://github.com/jupyter/jupyter_core/compare/4.9.2...4.10.0)

---
updated-dependencies:
- dependency-name: jupyter-core
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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 2022-04-20 11:11:16 -07:00
github-actions[bot]
8a14c40fe8
Update Python dependencies (#2788) 
Co-authored-by: Super-Linter Automation <noreply@github.com>
 2022-04-19 10:00:30 -07:00
dependabot[bot]
1b0a2965ad
Bump yte from 1.2.0 to 1.2.1 in /dependencies/python (#2775) 
Bumps [yte](https://github.com/koesterlab/yte) from 1.2.0 to 1.2.1.
- [Release notes](https://github.com/koesterlab/yte/releases)
- [Changelog](https://github.com/koesterlab/yte/blob/main/CHANGELOG.md)
- [Commits](https://github.com/koesterlab/yte/compare/v1.2.0...v1.2.1)

---
updated-dependencies:
- dependency-name: yte
  dependency-type: direct:production
  update-type: version-update:semver-patch
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 2022-04-11 12:55:49 -05:00
Super-Linter Automation
401a175228 Update Python dependencies 2022-04-04 09:32:17 -04:00
Super-Linter Automation
9f875389ff Update Python dependencies 2022-03-28 09:35:32 -04:00
github-actions[bot]
2bcdb3d248
Update Python dependencies (#2644) 
Co-authored-by: Super-Linter Automation <noreply@github.com>
 2022-03-21 13:09:41 -05:00
dependabot[bot]
6abfa2b339
Bump snakemake from 7.1.0 to 7.2.1 in /dependencies/python (#2637) 
Bumps [snakemake](https://github.com/snakemake/snakemake) from 7.1.0 to 7.2.1.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](https://github.com/snakemake/snakemake/compare/v7.1.0...v7.2.1)

---
updated-dependencies:
- dependency-name: snakemake
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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 2022-03-14 10:48:30 -05:00
github-actions[bot]
07b2cc9eab
Update Python dependencies (#2616) 
Co-authored-by: Super-Linter Automation <noreply@github.com>
 2022-03-14 08:54:52 -05:00
Super-Linter Automation
71957137ef Update Python dependencies 2022-03-07 10:32:23 -05:00
Super-Linter Automation
27aa4a2bb5 Update Python dependencies 2022-03-01 10:52:09 -05:00
Super-Linter Automation
3403d67934 Update Python dependencies 2022-02-28 09:27:26 -05:00
github-actions[bot]
069df12b17
Update Python dependencies (#2546) 
Co-authored-by: Super-Linter Automation <noreply@github.com>
 2022-02-22 11:21:32 -06:00
dependabot[bot]
8a022dcb7a
Bump jupyter-core from 4.9.1 to 4.9.2 in /dependencies/python (#2530) 
Bumps [jupyter-core](https://jupyter.org) from 4.9.1 to 4.9.2.

---
updated-dependencies:
- dependency-name: jupyter-core
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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 2022-02-22 08:58:02 -06:00
dependabot[bot]
524c99f161
Bump gitpython from 3.1.26 to 3.1.27 in /dependencies/python (#2532) 
Bumps [gitpython](https://github.com/gitpython-developers/GitPython) from 3.1.26 to 3.1.27.
- [Release notes](https://github.com/gitpython-developers/GitPython/releases)
- [Changelog](https://github.com/gitpython-developers/GitPython/blob/main/CHANGES)
- [Commits](https://github.com/gitpython-developers/GitPython/compare/3.1.26...3.1.27)

---
updated-dependencies:
- dependency-name: gitpython
  dependency-type: direct:production
  update-type: version-update:semver-patch
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 2022-02-22 08:57:48 -06:00
Brett Logan
892e5ab2ec Update deps 2022-02-14 13:39:05 -05:00
dependabot[bot]
aeaca1dfae
Bump snakemake from 6.12.3 to 6.13.1 in /dependencies/python (#2380) 
Bumps [snakemake](https://github.com/snakemake/snakemake) from 6.12.3 to 6.13.1.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Commits](https://github.com/snakemake/snakemake/compare/v6.12.3...v6.13.1)

---
updated-dependencies:
- dependency-name: snakemake
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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 2022-01-24 09:11:39 -06:00
dependabot[bot]
aed5376439
Bump gitpython from 3.1.24 to 3.1.26 in /dependencies/python (#2351) 
Bumps [gitpython](https://github.com/gitpython-developers/GitPython) from 3.1.24 to 3.1.26.
- [Release notes](https://github.com/gitpython-developers/GitPython/releases)
- [Changelog](https://github.com/gitpython-developers/GitPython/blob/main/CHANGES)
- [Commits](https://github.com/gitpython-developers/GitPython/compare/3.1.24...3.1.26)

---
updated-dependencies:
- dependency-name: gitpython
  dependency-type: direct:production
  update-type: version-update:semver-patch
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 2022-01-18 13:57:10 -06:00
dependabot[bot]
0651230a6e Bump pyrsistent from 0.18.0 to 0.18.1 in /dependencies/python 
Bumps [pyrsistent](https://github.com/tobgu/pyrsistent) from 0.18.0 to 0.18.1.
- [Release notes](https://github.com/tobgu/pyrsistent/releases)
- [Changelog](https://github.com/tobgu/pyrsistent/blob/master/CHANGES.txt)
- [Commits](https://github.com/tobgu/pyrsistent/compare/v0.18.0...v0.18.1)

---
updated-dependencies:
- dependency-name: pyrsistent
  dependency-type: direct:production
  update-type: version-update:semver-patch
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 2022-01-18 14:08:52 -05:00
dependabot[bot]
53ad488764
Bump urllib3 from 1.26.7 to 1.26.8 in /dependencies/python (#2334) 
Bumps [urllib3](https://github.com/urllib3/urllib3) from 1.26.7 to 1.26.8.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/1.26.8/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/1.26.7...1.26.8)

---
updated-dependencies:
- dependency-name: urllib3
  dependency-type: direct:production
  update-type: version-update:semver-patch
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 2022-01-11 12:01:58 -06:00
Jameel Al-Aziz
7e1683407d Update Dependabot for python virtual envs 
* Simplify virtualenv installation to use multiple requirements files in
  a single directory. This eliminates the packages.txt file and provides
  an easier path to adding new tools in the future. It also allows us to
  simplify the dependenabot configuration as all requirements files are
  in a single directory.
* Update dependabot.yml to point to the new Python dependencies folder.
 2022-01-11 10:05:56 -05:00
Renamed from dependencies/python/snakemake/requirements.txt (Browse further)