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Author SHA1 Message Date
Lukas Gravley
1977cb86e0
Merge pull request #808 from PeterDaveHello/patch-1 
Remove unnecessary --update for apk in Dockerfile
 2020-10-07 11:37:13 -05:00
Lukas Gravley
4a3f58b3bf
Merge pull request #810 from github/dependabot/pip/dependencies/cfn-lint-0.37.1 
Bump cfn-lint from 0.37.0 to 0.37.1 in /dependencies
 2020-10-07 11:18:44 -05:00
Lukas Gravley
f577942e53
Merge pull request #811 from github/dependabot/pip/dependencies/snakefmt-0.2.2 
Bump snakefmt from 0.2.1 to 0.2.2 in /dependencies
 2020-10-07 11:18:31 -05:00
Lukas Gravley
c713278cb8
Merge pull request #814 from omusavi/doc-fix 
Fix documentation error with VALIDATE_MD being renamed
 2020-10-07 11:18:16 -05:00
Lukas Gravley
494518d099
Merge pull request #803 from ferrarimarco/centralize-file-listing-logic 
Centralize file list building logic in buildFileList.sh
 2020-10-07 11:16:26 -05:00
Marco Ferrari
68e15659b8 Centralize file list building logic in buildFileList.sh 2020-10-07 16:36:49 +02:00
Lukas Gravley
411ff990da
Merge pull request #802 from ferrarimarco/dynamically-init-file-arrays 
Dynamically initialize FILE_ARRAY variables, add a missing export
 2020-10-07 09:14:18 -05:00
dependabot[bot]
a743f97b6c
Bump snakefmt from 0.2.1 to 0.2.2 in /dependencies 
Bumps [snakefmt](https://github.com/snakemake/snakefmt) from 0.2.1 to 0.2.2.
- [Release notes](https://github.com/snakemake/snakefmt/releases)
- [Changelog](https://github.com/snakemake/snakefmt/blob/master/CHANGELOG.md)
- [Commits](https://github.com/snakemake/snakefmt/compare/0.2.1...0.2.2)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-10-07 05:52:20 +00:00
dependabot[bot]
ed717fa7b4
Bump cfn-lint from 0.37.0 to 0.37.1 in /dependencies 
Bumps [cfn-lint](https://github.com/aws-cloudformation/cfn-python-lint) from 0.37.0 to 0.37.1.
- [Release notes](https://github.com/aws-cloudformation/cfn-python-lint/releases)
- [Changelog](https://github.com/aws-cloudformation/cfn-python-lint/blob/master/CHANGELOG.md)
- [Commits](https://github.com/aws-cloudformation/cfn-python-lint/compare/v0.37.0...v0.37.1)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-10-07 05:48:40 +00:00
Omeed Musavi
b69b2b124b Fix documentation error with VALIDATE_MD being renamed to VALIDATE_MARKDOWN 2020-10-06 15:05:15 -04:00
Lukas Gravley
89346152b6
Merge pull request #799 from github/dependabot/pip/dependencies/snakemake-5.26.1 
Bump snakemake from 5.26.0 to 5.26.1 in /dependencies
 2020-10-06 12:50:36 -05:00
Lukas Gravley
30bbf89cae
Merge pull request #798 from github/dependabot/npm_and_yarn/dependencies/markdownlint-cli-0.24.0 
Bump markdownlint-cli from 0.23.2 to 0.24.0 in /dependencies
 2020-10-06 12:50:17 -05:00
dependabot[bot]
bae8ace24e
Bump snakemake from 5.26.0 to 5.26.1 in /dependencies 
Bumps [snakemake](https://github.com/snakemake/snakemake) from 5.26.0 to 5.26.1.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Commits](https://github.com/snakemake/snakemake/compare/v5.26.0...v5.26.1)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-10-06 16:24:04 +00:00
Lukas Gravley
627dc81beb
Merge pull request #805 from github/dependabot/pip/dependencies/flake8-3.8.4 
Bump flake8 from 3.8.3 to 3.8.4 in /dependencies
 2020-10-06 11:22:10 -05:00
Lukas Gravley
03cfc9ed7f
Merge pull request #806 from github/dependabot/npm_and_yarn/dependencies/eslint-plugin-jest-24.1.0 
Bump eslint-plugin-jest from 24.0.2 to 24.1.0 in /dependencies
 2020-10-06 11:21:53 -05:00
Peter Dave Hello
7aa29dad84
Remove unnecessary --update for apk in Dockerfile 
There are two `apk add` use both `--update` and `--no-cache` parameter,
which is unnecessary, usually should use only `--no-cache` to prevent
leaving cache files, just like the other `apk add` in line 249
 2020-10-06 22:24:39 +08:00
dependabot[bot]
aad01ee676
Bump eslint-plugin-jest from 24.0.2 to 24.1.0 in /dependencies 
Bumps [eslint-plugin-jest](https://github.com/jest-community/eslint-plugin-jest) from 24.0.2 to 24.1.0.
- [Release notes](https://github.com/jest-community/eslint-plugin-jest/releases)
- [Changelog](https://github.com/jest-community/eslint-plugin-jest/blob/master/CHANGELOG.md)
- [Commits](https://github.com/jest-community/eslint-plugin-jest/compare/v24.0.2...v24.1.0)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-10-06 05:49:00 +00:00
dependabot[bot]
464153acf6
Bump flake8 from 3.8.3 to 3.8.4 in /dependencies 
Bumps [flake8](https://gitlab.com/pycqa/flake8) from 3.8.3 to 3.8.4.
- [Release notes](https://gitlab.com/pycqa/flake8/tags)
- [Commits](https://gitlab.com/pycqa/flake8/compare/3.8.3...3.8.4)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-10-05 06:30:37 +00:00
Marco Ferrari
351496fe72 Populate FILE_ARRAY_DOCKERFILE_HADOLINT 2020-10-03 12:19:33 +02:00
Marco Ferrari
d210896355 Set FILE_ARRAY_EDITORCONFIG 2020-10-03 00:33:01 +02:00
Marco Ferrari
e1b1c7d223 Dynamically initialize FILE_ARRAY variables 2020-10-02 23:02:47 +02:00
dependabot[bot]
b5d1c5d94c
Bump markdownlint-cli from 0.23.2 to 0.24.0 in /dependencies 
Bumps [markdownlint-cli](https://github.com/igorshubovych/markdownlint-cli) from 0.23.2 to 0.24.0.
- [Release notes](https://github.com/igorshubovych/markdownlint-cli/releases)
- [Commits](https://github.com/igorshubovych/markdownlint-cli/compare/v0.23.2...v0.24.0)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-10-02 05:42:41 +00:00
Lukas Gravley
6902cbfd3d
Merge pull request #788 from st3v3nhunt/fix-linters-dir-path 
Correct path to linters directory
 2020-10-01 10:52:05 -05:00
Lukas Gravley
a94d86f6ff
Merge pull request #789 from github/dependabot/pip/dependencies/snakefmt-0.2.1 
Bump snakefmt from 0.2.0 to 0.2.1 in /dependencies
 2020-10-01 10:51:18 -05:00
Lukas Gravley
ab4ba1dab7
Merge pull request #790 from github/dependabot/pip/dependencies/snakemake-5.26.0 
Bump snakemake from 5.25.0 to 5.26.0 in /dependencies
 2020-10-01 10:50:58 -05:00
Lukas Gravley
8b16ef3040
Merge pull request #781 from ferrarimarco/remove-unneeded-vars 
Remove unneeded variables and eval the rest
 2020-10-01 10:50:41 -05:00
dependabot[bot]
9cd2011856
Bump snakemake from 5.25.0 to 5.26.0 in /dependencies 
Bumps [snakemake](https://github.com/snakemake/snakemake) from 5.25.0 to 5.26.0.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Commits](https://github.com/snakemake/snakemake/compare/v5.25.0...v5.26.0)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-10-01 05:59:23 +00:00
dependabot[bot]
ae22c7041c
Bump snakefmt from 0.2.0 to 0.2.1 in /dependencies 
Bumps [snakefmt](https://github.com/snakemake/snakefmt) from 0.2.0 to 0.2.1.
- [Release notes](https://github.com/snakemake/snakefmt/releases)
- [Changelog](https://github.com/snakemake/snakefmt/blob/master/CHANGELOG.md)
- [Commits](https://github.com/snakemake/snakefmt/compare/0.2.0...0.2.1)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-10-01 05:56:50 +00:00
Steven Hunt
6d125cb5a4
Correct path to linters directory 2020-09-30 23:27:34 +01:00
Marco Ferrari
2d79a66cf8 Remove unneeded variables from Dockerfile 2020-09-30 18:31:45 +02:00
Lukas Gravley
f010fb3dd3
Merge pull request #784 from github/dependabot/pip/dependencies/yamllint-1.25.0 
Bump yamllint from 1.24.2 to 1.25.0 in /dependencies
 2020-09-30 09:29:30 -05:00
Lukas Gravley
c1fdeab4a7
Merge pull request #785 from github/dependabot/pip/dependencies/cfn-lint-0.37.0 
Bump cfn-lint from 0.36.1 to 0.37.0 in /dependencies
 2020-09-30 09:29:03 -05:00
dependabot[bot]
eabe97a87b
Bump cfn-lint from 0.36.1 to 0.37.0 in /dependencies 
Bumps [cfn-lint](https://github.com/aws-cloudformation/cfn-python-lint) from 0.36.1 to 0.37.0.
- [Release notes](https://github.com/aws-cloudformation/cfn-python-lint/releases)
- [Changelog](https://github.com/aws-cloudformation/cfn-python-lint/blob/master/CHANGELOG.md)
- [Commits](https://github.com/aws-cloudformation/cfn-python-lint/compare/v0.36.1...v0.37.0)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-30 05:46:25 +00:00
dependabot[bot]
e747dfbdcf
Bump yamllint from 1.24.2 to 1.25.0 in /dependencies 
Bumps [yamllint](https://github.com/adrienverge/yamllint) from 1.24.2 to 1.25.0.
- [Release notes](https://github.com/adrienverge/yamllint/releases)
- [Changelog](https://github.com/adrienverge/yamllint/blob/master/CHANGELOG.rst)
- [Commits](https://github.com/adrienverge/yamllint/compare/v1.24.2...v1.25.0)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-30 05:44:30 +00:00
Marco Ferrari
973bfdea8e Initialize all log-related ASAP 2020-09-29 22:46:24 +02:00
Marco Ferrari
9371fab670 Remove unneeded variables and eval the rest 2020-09-29 22:33:11 +02:00
Lukas Gravley
58f0443612
Merge pull request #783 from github/dependabot/npm_and_yarn/dependencies/stoplight/spectral-5.6.0 
Bump @stoplight/spectral from 5.5.0 to 5.6.0 in /dependencies
 2020-09-29 08:56:20 -05:00
dependabot[bot]
a394cf7577
Bump @stoplight/spectral from 5.5.0 to 5.6.0 in /dependencies 
Bumps [@stoplight/spectral](https://github.com/stoplightio/spectral) from 5.5.0 to 5.6.0.
- [Release notes](https://github.com/stoplightio/spectral/releases)
- [Changelog](https://github.com/stoplightio/spectral/blob/v5.6.0/CHANGELOG.md)
- [Commits](https://github.com/stoplightio/spectral/compare/v5.5.0...v5.6.0)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-29 05:45:33 +00:00
Lukas Gravley
3a5f8f33a8
Merge pull request #777 from github/upgradeBlackAgain 
fix version
 2020-09-28 09:48:50 -05:00
Lukas Gravley
320983092c
didnt mean to degrade this 2020-09-28 09:30:10 -05:00
Lucas Gravley
b18d4a25ba adding it 2020-09-28 09:27:05 -05:00
Lukas Gravley
e3bf86c4b4
Update Pipfile 2020-09-28 09:25:08 -05:00
Lucas Gravley
2ebf88603d fix version 2020-09-28 08:56:55 -05:00
Lukas Gravley
18c32b7dca
Merge pull request #766 from mshimokura/editorconfig_lintall 
Lint all changed files with editorconfig-checker
 2020-09-28 08:38:51 -05:00
Lukas Gravley
167af0854e
Merge pull request #767 from kpj/master 
Fix various Snakemake related issues
 2020-09-28 08:36:48 -05:00
Lukas Gravley
6482f45462
Merge pull request #769 from ferrarimarco/remove-read-only-change-flag 
Remove READ_ONLY_CHANGE_FLAG flag and fix .editorconfig and shfmt tests
 2020-09-28 08:35:58 -05:00
Lukas Gravley
0ed58d58d4
Merge pull request #771 from ferrarimarco/sort-env 
Sort environment variables when printing debug info
 2020-09-28 08:34:39 -05:00
Lukas Gravley
be6f3afa7f
Merge pull request #770 from ferrarimarco/dockerignore 
Ignore .git and symlink .dockerignore
 2020-09-28 08:34:02 -05:00
Lukas Gravley
bbd449b9ec
Merge pull request #772 from github/dependabot/npm_and_yarn/dependencies/eslint-config-prettier-6.12.0 
Bump eslint-config-prettier from 6.11.0 to 6.12.0 in /dependencies
 2020-09-28 08:16:17 -05:00
Lukas Gravley
d3f9c1179a
Merge pull request #773 from github/dependabot/pip/dependencies/yq-2.11.1 
Bump yq from 2.11.0 to 2.11.1 in /dependencies
 2020-09-28 08:16:01 -05:00