Lukas Gravley
c3a73ea73e
Merge pull request #818 from github/fixHadolint
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Fix hadolint
2020-10-08 09:29:05 -05:00
Lucas Gravley
68d629d461
fix pip
2020-10-08 09:14:31 -05:00
Lucas Gravley
08c1113afc
fix it
2020-10-08 09:11:26 -05:00
Lucas Gravley
2bec091dbb
adding rules
2020-10-08 09:05:32 -05:00
Lucas Gravley
ae512c87d0
Merge branch 'master' into patch-2
2020-10-08 08:47:45 -05:00
Lukas Gravley
d30864bfb5
Merge pull request #815 from ferrarimarco/generalize-rules
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Dynamically load linter rules
2020-10-07 12:54:33 -05:00
Marco Ferrari
a2b3938ea2
Dynamically load linter rules
2020-10-07 19:02:36 +02:00
Lukas Gravley
1977cb86e0
Merge pull request #808 from PeterDaveHello/patch-1
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Remove unnecessary --update for apk in Dockerfile
2020-10-07 11:37:13 -05:00
Lukas Gravley
4a3f58b3bf
Merge pull request #810 from github/dependabot/pip/dependencies/cfn-lint-0.37.1
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Bump cfn-lint from 0.37.0 to 0.37.1 in /dependencies
2020-10-07 11:18:44 -05:00
Lukas Gravley
f577942e53
Merge pull request #811 from github/dependabot/pip/dependencies/snakefmt-0.2.2
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Bump snakefmt from 0.2.1 to 0.2.2 in /dependencies
2020-10-07 11:18:31 -05:00
Lukas Gravley
c713278cb8
Merge pull request #814 from omusavi/doc-fix
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Fix documentation error with VALIDATE_MD being renamed
2020-10-07 11:18:16 -05:00
Lukas Gravley
494518d099
Merge pull request #803 from ferrarimarco/centralize-file-listing-logic
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Centralize file list building logic in buildFileList.sh
2020-10-07 11:16:26 -05:00
Marco Ferrari
68e15659b8
Centralize file list building logic in buildFileList.sh
2020-10-07 16:36:49 +02:00
Lukas Gravley
411ff990da
Merge pull request #802 from ferrarimarco/dynamically-init-file-arrays
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Dynamically initialize FILE_ARRAY variables, add a missing export
2020-10-07 09:14:18 -05:00
dependabot[bot]
a743f97b6c
Bump snakefmt from 0.2.1 to 0.2.2 in /dependencies
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Bumps [snakefmt](https://github.com/snakemake/snakefmt ) from 0.2.1 to 0.2.2.
- [Release notes](https://github.com/snakemake/snakefmt/releases )
- [Changelog](https://github.com/snakemake/snakefmt/blob/master/CHANGELOG.md )
- [Commits](https://github.com/snakemake/snakefmt/compare/0.2.1...0.2.2 )
Signed-off-by: dependabot[bot] <support@github.com>
2020-10-07 05:52:20 +00:00
dependabot[bot]
ed717fa7b4
Bump cfn-lint from 0.37.0 to 0.37.1 in /dependencies
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Bumps [cfn-lint](https://github.com/aws-cloudformation/cfn-python-lint ) from 0.37.0 to 0.37.1.
- [Release notes](https://github.com/aws-cloudformation/cfn-python-lint/releases )
- [Changelog](https://github.com/aws-cloudformation/cfn-python-lint/blob/master/CHANGELOG.md )
- [Commits](https://github.com/aws-cloudformation/cfn-python-lint/compare/v0.37.0...v0.37.1 )
Signed-off-by: dependabot[bot] <support@github.com>
2020-10-07 05:48:40 +00:00
Omeed Musavi
b69b2b124b
Fix documentation error with VALIDATE_MD being renamed to VALIDATE_MARKDOWN
2020-10-06 15:05:15 -04:00
Lukas Gravley
89346152b6
Merge pull request #799 from github/dependabot/pip/dependencies/snakemake-5.26.1
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Bump snakemake from 5.26.0 to 5.26.1 in /dependencies
2020-10-06 12:50:36 -05:00
Lukas Gravley
30bbf89cae
Merge pull request #798 from github/dependabot/npm_and_yarn/dependencies/markdownlint-cli-0.24.0
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Bump markdownlint-cli from 0.23.2 to 0.24.0 in /dependencies
2020-10-06 12:50:17 -05:00
dependabot[bot]
bae8ace24e
Bump snakemake from 5.26.0 to 5.26.1 in /dependencies
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Bumps [snakemake](https://github.com/snakemake/snakemake ) from 5.26.0 to 5.26.1.
- [Release notes](https://github.com/snakemake/snakemake/releases )
- [Commits](https://github.com/snakemake/snakemake/compare/v5.26.0...v5.26.1 )
Signed-off-by: dependabot[bot] <support@github.com>
2020-10-06 16:24:04 +00:00
Lukas Gravley
627dc81beb
Merge pull request #805 from github/dependabot/pip/dependencies/flake8-3.8.4
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Bump flake8 from 3.8.3 to 3.8.4 in /dependencies
2020-10-06 11:22:10 -05:00
Lukas Gravley
03cfc9ed7f
Merge pull request #806 from github/dependabot/npm_and_yarn/dependencies/eslint-plugin-jest-24.1.0
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Bump eslint-plugin-jest from 24.0.2 to 24.1.0 in /dependencies
2020-10-06 11:21:53 -05:00
Peter Dave Hello
0134ffcfc0
Simplify shfmt install by using prebuilt binary
2020-10-06 22:31:53 +08:00
Peter Dave Hello
7aa29dad84
Remove unnecessary --update for apk in Dockerfile
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There are two `apk add` use both `--update` and `--no-cache` parameter,
which is unnecessary, usually should use only `--no-cache` to prevent
leaving cache files, just like the other `apk add` in line 249
2020-10-06 22:24:39 +08:00
dependabot[bot]
aad01ee676
Bump eslint-plugin-jest from 24.0.2 to 24.1.0 in /dependencies
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Bumps [eslint-plugin-jest](https://github.com/jest-community/eslint-plugin-jest ) from 24.0.2 to 24.1.0.
- [Release notes](https://github.com/jest-community/eslint-plugin-jest/releases )
- [Changelog](https://github.com/jest-community/eslint-plugin-jest/blob/master/CHANGELOG.md )
- [Commits](https://github.com/jest-community/eslint-plugin-jest/compare/v24.0.2...v24.1.0 )
Signed-off-by: dependabot[bot] <support@github.com>
2020-10-06 05:49:00 +00:00
dependabot[bot]
464153acf6
Bump flake8 from 3.8.3 to 3.8.4 in /dependencies
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Bumps [flake8](https://gitlab.com/pycqa/flake8 ) from 3.8.3 to 3.8.4.
- [Release notes](https://gitlab.com/pycqa/flake8/tags )
- [Commits](https://gitlab.com/pycqa/flake8/compare/3.8.3...3.8.4 )
Signed-off-by: dependabot[bot] <support@github.com>
2020-10-05 06:30:37 +00:00
Marco Ferrari
351496fe72
Populate FILE_ARRAY_DOCKERFILE_HADOLINT
2020-10-03 12:19:33 +02:00
Marco Ferrari
d210896355
Set FILE_ARRAY_EDITORCONFIG
2020-10-03 00:33:01 +02:00
Marco Ferrari
e1b1c7d223
Dynamically initialize FILE_ARRAY variables
2020-10-02 23:02:47 +02:00
dependabot[bot]
b5d1c5d94c
Bump markdownlint-cli from 0.23.2 to 0.24.0 in /dependencies
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Bumps [markdownlint-cli](https://github.com/igorshubovych/markdownlint-cli ) from 0.23.2 to 0.24.0.
- [Release notes](https://github.com/igorshubovych/markdownlint-cli/releases )
- [Commits](https://github.com/igorshubovych/markdownlint-cli/compare/v0.23.2...v0.24.0 )
Signed-off-by: dependabot[bot] <support@github.com>
2020-10-02 05:42:41 +00:00
Lukas Gravley
6902cbfd3d
Merge pull request #788 from st3v3nhunt/fix-linters-dir-path
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Correct path to linters directory
2020-10-01 10:52:05 -05:00
Lukas Gravley
a94d86f6ff
Merge pull request #789 from github/dependabot/pip/dependencies/snakefmt-0.2.1
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Bump snakefmt from 0.2.0 to 0.2.1 in /dependencies
2020-10-01 10:51:18 -05:00
Lukas Gravley
ab4ba1dab7
Merge pull request #790 from github/dependabot/pip/dependencies/snakemake-5.26.0
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Bump snakemake from 5.25.0 to 5.26.0 in /dependencies
2020-10-01 10:50:58 -05:00
Lukas Gravley
8b16ef3040
Merge pull request #781 from ferrarimarco/remove-unneeded-vars
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Remove unneeded variables and eval the rest
2020-10-01 10:50:41 -05:00
dependabot[bot]
9cd2011856
Bump snakemake from 5.25.0 to 5.26.0 in /dependencies
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Bumps [snakemake](https://github.com/snakemake/snakemake ) from 5.25.0 to 5.26.0.
- [Release notes](https://github.com/snakemake/snakemake/releases )
- [Commits](https://github.com/snakemake/snakemake/compare/v5.25.0...v5.26.0 )
Signed-off-by: dependabot[bot] <support@github.com>
2020-10-01 05:59:23 +00:00
dependabot[bot]
ae22c7041c
Bump snakefmt from 0.2.0 to 0.2.1 in /dependencies
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Bumps [snakefmt](https://github.com/snakemake/snakefmt ) from 0.2.0 to 0.2.1.
- [Release notes](https://github.com/snakemake/snakefmt/releases )
- [Changelog](https://github.com/snakemake/snakefmt/blob/master/CHANGELOG.md )
- [Commits](https://github.com/snakemake/snakefmt/compare/0.2.0...0.2.1 )
Signed-off-by: dependabot[bot] <support@github.com>
2020-10-01 05:56:50 +00:00
Steven Hunt
6d125cb5a4
Correct path to linters directory
2020-09-30 23:27:34 +01:00
Marco Ferrari
2d79a66cf8
Remove unneeded variables from Dockerfile
2020-09-30 18:31:45 +02:00
Lukas Gravley
f010fb3dd3
Merge pull request #784 from github/dependabot/pip/dependencies/yamllint-1.25.0
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Bump yamllint from 1.24.2 to 1.25.0 in /dependencies
2020-09-30 09:29:30 -05:00
Lukas Gravley
c1fdeab4a7
Merge pull request #785 from github/dependabot/pip/dependencies/cfn-lint-0.37.0
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Bump cfn-lint from 0.36.1 to 0.37.0 in /dependencies
2020-09-30 09:29:03 -05:00
dependabot[bot]
eabe97a87b
Bump cfn-lint from 0.36.1 to 0.37.0 in /dependencies
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Bumps [cfn-lint](https://github.com/aws-cloudformation/cfn-python-lint ) from 0.36.1 to 0.37.0.
- [Release notes](https://github.com/aws-cloudformation/cfn-python-lint/releases )
- [Changelog](https://github.com/aws-cloudformation/cfn-python-lint/blob/master/CHANGELOG.md )
- [Commits](https://github.com/aws-cloudformation/cfn-python-lint/compare/v0.36.1...v0.37.0 )
Signed-off-by: dependabot[bot] <support@github.com>
2020-09-30 05:46:25 +00:00
dependabot[bot]
e747dfbdcf
Bump yamllint from 1.24.2 to 1.25.0 in /dependencies
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Bumps [yamllint](https://github.com/adrienverge/yamllint ) from 1.24.2 to 1.25.0.
- [Release notes](https://github.com/adrienverge/yamllint/releases )
- [Changelog](https://github.com/adrienverge/yamllint/blob/master/CHANGELOG.rst )
- [Commits](https://github.com/adrienverge/yamllint/compare/v1.24.2...v1.25.0 )
Signed-off-by: dependabot[bot] <support@github.com>
2020-09-30 05:44:30 +00:00
Marco Ferrari
973bfdea8e
Initialize all log-related ASAP
2020-09-29 22:46:24 +02:00
Marco Ferrari
9371fab670
Remove unneeded variables and eval the rest
2020-09-29 22:33:11 +02:00
Lukas Gravley
58f0443612
Merge pull request #783 from github/dependabot/npm_and_yarn/dependencies/stoplight/spectral-5.6.0
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Bump @stoplight/spectral from 5.5.0 to 5.6.0 in /dependencies
2020-09-29 08:56:20 -05:00
dependabot[bot]
a394cf7577
Bump @stoplight/spectral from 5.5.0 to 5.6.0 in /dependencies
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Bumps [@stoplight/spectral](https://github.com/stoplightio/spectral ) from 5.5.0 to 5.6.0.
- [Release notes](https://github.com/stoplightio/spectral/releases )
- [Changelog](https://github.com/stoplightio/spectral/blob/v5.6.0/CHANGELOG.md )
- [Commits](https://github.com/stoplightio/spectral/compare/v5.5.0...v5.6.0 )
Signed-off-by: dependabot[bot] <support@github.com>
2020-09-29 05:45:33 +00:00
Lukas Gravley
3a5f8f33a8
Merge pull request #777 from github/upgradeBlackAgain
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fix version
2020-09-28 09:48:50 -05:00
Lukas Gravley
320983092c
didnt mean to degrade this
2020-09-28 09:30:10 -05:00
Lucas Gravley
b18d4a25ba
adding it
2020-09-28 09:27:05 -05:00
Lukas Gravley
e3bf86c4b4
Update Pipfile
2020-09-28 09:25:08 -05:00