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[Snakemake] Fix 'LINTER_NAME'

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kpj 2020-09-08 10:19:56 +02:00
parent 3762abecb7
commit 581f07a32b
2 changed files with 2 additions and 2 deletions
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2
lib/linter.sh
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@ -1859,7 +1859,7 @@ if [ "${VALIDATE_SNAKEMAKE_LINT}" == "true" ]; then
# Lint the files with snakefmt #
################################
# LintCodebase "FILE_TYPE" "LINTER_NAME" "LINTER_CMD" "FILE_TYPES_REGEX" "FILE_ARRAY"
LintCodebase "SNAKEMAKE_LINT" "snakemake --lint" "snakemake --lint -s" ".*\.\(smk\)\$" "\(Snakefile|.*\.smk\)\$" "${FILE_ARRAY_SNAKEMAKE[@]}"
LintCodebase "SNAKEMAKE_LINT" "snakemake" "snakemake --lint -s" ".*\.\(smk\)\$" "\(Snakefile|.*\.smk\)\$" "${FILE_ARRAY_SNAKEMAKE[@]}"
fi
######################

2
lib/worker.sh
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@ -702,7 +702,7 @@ function RunTestCases() {
TestCodebase "RAKU" "raku" "raku -c" ".*\.\(raku\|rakumod\|rakutest\|pm6\|pl6\|p6\)\$" "raku"
TestCodebase "RUBY" "rubocop" "rubocop -c ${RUBY_LINTER_RULES}" ".*\.\(rb\)\$" "ruby"
TestCodebase "SHELL_SHFMT" "shfmt" "shfmt -d" ".*\.\(sh\|bash\|dash\|ksh\)\$" "shell_shfmt"
TestCodebase "SNAKEMAKE_LINT" "snakemake --lint" "snakemake --lint -s" ".*\.\(smk\)\$" "snakemake"
TestCodebase "SNAKEMAKE_LINT" "snakemake" "snakemake --lint -s" ".*\.\(smk\)\$" "snakemake"
TestCodebase "SNAKEMAKE_SNAKEFMT" "snakefmt" "snakefmt --config ${SNAKEMAKE_SNAKEFMT_LINTER_RULES} --diff" ".*\.\(smk\)\$" "snakemake"
TestCodebase "STATES" "asl-validator" "asl-validator --json-path" ".*\.\(json\)\$" "states"
TestCodebase "SQL" "sql-lint" "sql-lint --config ${SQL_LINTER_RULES}" ".*\.\(sql\)\$" "sql"