superlint/dependencies/python/snakemake/requirements.txt
Brett Logan fc6c5b34d9
Use Virtual Environment for Python Deps (#2294)
* Build static python depenencies

* Address linting

* Fix copy path

* cleaner

* Stage virtual environments

* Update Dockerfile to support virtual environments

* Remove old python builds

* Remove unnecessary RUN step

* Fix merge conflicts

* Remove test checking for PIP packages

We use virtual environments and no longer install the packages
via pip directly in the image. It should be enough that the version
tests check for the existence already and that the version
comes back correctly.

* Remove binary installation of black

* cleaner

* Remove pip

* pretty

Co-authored-by: Admiral Awkbar <admiralawkbar@github.com>
2022-01-10 15:23:22 -06:00

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appdirs==1.4.4
attrs==21.4.0
certifi==2021.10.8
charset-normalizer==2.0.10
ConfigArgParse==1.5.3
connection-pool==0.0.3
datrie==0.8.2
distlib==0.3.4
docutils==0.18.1
filelock==3.4.2
gitdb==4.0.9
GitPython==3.1.24
idna==3.3
ipython-genutils==0.2.0
jsonschema==4.3.3
jupyter-core==4.9.1
nbformat==5.1.3
platformdirs==2.4.1
psutil==5.9.0
PuLP==2.6.0
pyrsistent==0.18.0
PyYAML==6.0
ratelimiter==1.2.0.post0
requests==2.27.1
six==1.16.0
smart-open==5.2.1
smmap==5.0.0
snakemake==6.12.3
stopit==1.1.2
tabulate==0.8.9
toposort==1.7
traitlets==5.1.1
urllib3==1.26.7
virtualenv==20.13.0
wrapt==1.13.3