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529 commits

Author SHA1 Message Date
Marco Ferrari
dfaeaf317d Simplify rules files loading, plus fixes 2020-10-15 16:45:18 +02:00
Lucas Gravley
7a775854e7 cleaner 2020-10-13 13:46:46 -05:00
Lucas Gravley
c3a1403fa0 fix tekton to not trigger kuber 2020-10-13 12:54:14 -05:00
Lucas Gravley
d8b13b0fd8 now with files 2020-10-13 10:21:23 -05:00
Marco Ferrari
c201c0f6d1 Dynamically invoke linters 2020-10-13 09:08:03 +02:00
Lukas Gravley
e8091a4ee9
Merge pull request #827 from PascalBourdier/ignore-kustomize-file 
ignore kustomize file with kubeval
 2020-10-12 10:36:45 -05:00
Lukas Gravley
6bde44e755
Merge pull request #824 from mshimokura/ecrc_file 
editorconfig-checker - Use .ecrc Files
 2020-10-12 10:24:00 -05:00
Michael Shimokura
a5cada70f8 Revert "rename the variable to EDITORCONFIG_CHECKER_FILE_NAME for clarity" 
This reverts commit 23a463867d.
 2020-10-09 09:13:37 -04:00
Michael Shimokura
23a463867d rename the variable to EDITORCONFIG_CHECKER_FILE_NAME for clarity 2020-10-09 09:02:12 -04:00
Pascal Bourdier
32a5945dd8 embedding the negation in the existing if 2020-10-09 11:53:34 +02:00
Pascal Bourdier
d975791bb9 ignore kustomize file with kubeval 
currently, kubeval doesn't support kustomize file

so kubeval returns a false-positive about a missing `metadata` key:
```
2020-10-09 06:19:19 [ERROR ]   Found errors in [kubeval] linter!
2020-10-09 06:19:19 [ERROR ]   [ERR  - .../kustomization.yml: Missing 'metadata' key]
2020-10-09 06:19:19 [ERROR ]   Linter CMD:[kubeval --strict .../kustomization.yml]
```
 2020-10-09 09:02:09 +02:00
Michael Shimokura
cd4798ea04 only assign EDITORCONFIG_FILE_NAME if not already assigned 2020-10-08 16:17:29 -04:00
Michael Shimokura
1312a3a3e4 use the .ecrc file 2020-10-08 15:27:47 -04:00
Tim Jones
a8746a7159 Add support for Terragrunt files 2020-10-08 18:18:22 +02:00
Marco Ferrari
a2b3938ea2 Dynamically load linter rules 2020-10-07 19:02:36 +02:00
Marco Ferrari
68e15659b8 Centralize file list building logic in buildFileList.sh 2020-10-07 16:36:49 +02:00
Marco Ferrari
d210896355 Set FILE_ARRAY_EDITORCONFIG 2020-10-03 00:33:01 +02:00
Marco Ferrari
e1b1c7d223 Dynamically initialize FILE_ARRAY variables 2020-10-02 23:02:47 +02:00
Marco Ferrari
973bfdea8e Initialize all log-related ASAP 2020-09-29 22:46:24 +02:00
Marco Ferrari
9371fab670 Remove unneeded variables and eval the rest 2020-09-29 22:33:11 +02:00
Lukas Gravley
18c32b7dca
Merge pull request #766 from mshimokura/editorconfig_lintall 
Lint all changed files with editorconfig-checker
 2020-09-28 08:38:51 -05:00
Lukas Gravley
167af0854e
Merge pull request #767 from kpj/master 
Fix various Snakemake related issues
 2020-09-28 08:36:48 -05:00
Marco Ferrari
31fd755fd7 Remove unneeded READ_ONLY_CHANGE_FLAG 2020-09-25 23:41:47 +02:00
kpj
9e7c84fbbb Fix various Snakemake related variable names 2020-09-24 16:06:12 +02:00
kpj
40f995365b Fix Snakefile regex 2020-09-24 15:55:47 +02:00
kpj
71ede6ccca Add missing 'GetLinterRules' calls 2020-09-24 15:54:24 +02:00
Michael Shimokura
12543b369b Lint all files with editorconfig-checker 
Since .editorconfig configuration files _could_ apply to any file, we
should pass in the RAW_FILE_ARRAY to it. This ensures that files of all
types are linted by editorconfig-checker.
 2020-09-24 09:02:24 -04:00
Lukas Gravley
84c79a186b
Merge branch 'master' into master 2020-09-22 08:56:09 -05:00
Marco Ferrari
f24f52be11 Lint with Kubeval and fixes 2020-09-22 01:49:01 +02:00
Lukas Gravley
f290145dfa
Update linter.sh 2020-09-21 13:51:46 -05:00
Lukas Gravley
06cb2ebb6f
Update linter.sh 2020-09-21 13:50:58 -05:00
Marco Ferrari
6168112f61 Fix ERROR_ON_MISSING_EXEC_BIT initialization 2020-09-21 14:43:44 +02:00
kpj
6f6004275f In anticipation of snakefmt 0.1.6, start using --check and --compact-diff 2020-09-18 16:32:01 +02:00
Marco Ferrari
5cefb9209f Make bash-exec errors or warnings configurable 2020-09-15 22:40:12 +02:00
NicolasVuillamy
e470df5431 Fix file filters: Reorder arguments to LintCodeBase function 2020-09-15 08:15:53 +02:00
kpj
5b51c2bd92 Use '--compact-diff' instead of '--diff' for snakefmt 2020-09-14 09:36:33 +02:00
Joseph Marino
2698bdfbc3
Fixed a typo in code comments 
Replaced the term "CSS" with "HTML" in code comments for the
HTML_LINTER_RULES variable.
 2020-09-11 15:16:55 -04:00
kpj
11f437df4c Fix usage of FILE_ARRAY_SNAKEMAKE 2020-09-11 13:51:15 +02:00
kpj
e1b2fd6085 Fix bug in Snakemake file regex 2020-09-11 13:49:05 +02:00
kpj
ec0577ae5b Add Snakemake to language array 2020-09-11 13:31:57 +02:00
NicolasVuillamy
27afc50d60 Set GROOVY Linter failure level to warning 2020-09-10 11:07:05 +02:00
NicolasVuillamy
c86e90b3d0 Solve conflicts + format 2020-09-09 20:22:32 +02:00
NicolasVuillamy
f072bc5c8d Merge remote-tracking branch 'github/master' 2020-09-09 20:18:21 +02:00
Marco Ferrari
83666ffaba Fix getting filename for hidden files 2020-09-08 19:20:49 +02:00
Lucas Gravley
a6c9656015 fixing vars 2020-09-08 09:47:57 -05:00
kpj
6f6e6e9d03 [Snakemake] Remove wrong function argument 2020-09-08 11:26:48 +02:00
kpj
581f07a32b [Snakemake] Fix 'LINTER_NAME' 2020-09-08 10:19:56 +02:00
kpj
8ac1c99a2e [Snakemake] Support both formatting using 'snakefmt' and linting using 'snakemake --lint' 2020-09-08 09:38:48 +02:00
kpj
ad262196ba [Snakemake] Also lint 'Snakefile' (without '.smk' suffix) 2020-09-08 09:11:54 +02:00
kpj
53f551c8b0 [Snakemake] Add '--config' parameter to 'snakefmt' calls 2020-09-07 17:26:58 +02:00