Lukas Gravley
|
84c79a186b
|
Merge branch 'master' into master
|
2020-09-22 08:56:09 -05:00 |
|
Marco Ferrari
|
f24f52be11
|
Lint with Kubeval and fixes
|
2020-09-22 01:49:01 +02:00 |
|
Lukas Gravley
|
f290145dfa
|
Update linter.sh
|
2020-09-21 13:51:46 -05:00 |
|
Lukas Gravley
|
06cb2ebb6f
|
Update linter.sh
|
2020-09-21 13:50:58 -05:00 |
|
Marco Ferrari
|
6168112f61
|
Fix ERROR_ON_MISSING_EXEC_BIT initialization
|
2020-09-21 14:43:44 +02:00 |
|
kpj
|
6f6004275f
|
In anticipation of snakefmt 0.1.6, start using --check and --compact-diff
|
2020-09-18 16:32:01 +02:00 |
|
Marco Ferrari
|
5cefb9209f
|
Make bash-exec errors or warnings configurable
|
2020-09-15 22:40:12 +02:00 |
|
NicolasVuillamy
|
e470df5431
|
Fix file filters: Reorder arguments to LintCodeBase function
|
2020-09-15 08:15:53 +02:00 |
|
kpj
|
5b51c2bd92
|
Use '--compact-diff' instead of '--diff' for snakefmt
|
2020-09-14 09:36:33 +02:00 |
|
Joseph Marino
|
2698bdfbc3
|
Fixed a typo in code comments
Replaced the term "CSS" with "HTML" in code comments for the
HTML_LINTER_RULES variable.
|
2020-09-11 15:16:55 -04:00 |
|
kpj
|
11f437df4c
|
Fix usage of FILE_ARRAY_SNAKEMAKE
|
2020-09-11 13:51:15 +02:00 |
|
kpj
|
e1b2fd6085
|
Fix bug in Snakemake file regex
|
2020-09-11 13:49:05 +02:00 |
|
kpj
|
ec0577ae5b
|
Add Snakemake to language array
|
2020-09-11 13:31:57 +02:00 |
|
NicolasVuillamy
|
27afc50d60
|
Set GROOVY Linter failure level to warning
|
2020-09-10 11:07:05 +02:00 |
|
NicolasVuillamy
|
c86e90b3d0
|
Solve conflicts + format
|
2020-09-09 20:22:32 +02:00 |
|
NicolasVuillamy
|
f072bc5c8d
|
Merge remote-tracking branch 'github/master'
|
2020-09-09 20:18:21 +02:00 |
|
Marco Ferrari
|
83666ffaba
|
Fix getting filename for hidden files
|
2020-09-08 19:20:49 +02:00 |
|
Lucas Gravley
|
a6c9656015
|
fixing vars
|
2020-09-08 09:47:57 -05:00 |
|
kpj
|
6f6e6e9d03
|
[Snakemake] Remove wrong function argument
|
2020-09-08 11:26:48 +02:00 |
|
kpj
|
581f07a32b
|
[Snakemake] Fix 'LINTER_NAME'
|
2020-09-08 10:19:56 +02:00 |
|
kpj
|
8ac1c99a2e
|
[Snakemake] Support both formatting using 'snakefmt' and linting using 'snakemake --lint'
|
2020-09-08 09:38:48 +02:00 |
|
kpj
|
ad262196ba
|
[Snakemake] Also lint 'Snakefile' (without '.smk' suffix)
|
2020-09-08 09:11:54 +02:00 |
|
kpj
|
53f551c8b0
|
[Snakemake] Add '--config' parameter to 'snakefmt' calls
|
2020-09-07 17:26:58 +02:00 |
|
kpj
|
1e453be7fa
|
[Snakemake] Update codebase
|
2020-09-07 16:49:07 +02:00 |
|
NicolasVuillamy
|
04c93b4ff5
|
Add management of FILTER_REGEX_INCLUDE and FILTER_REGEX_EXCLUDE options
|
2020-09-05 12:25:44 +02:00 |
|
Lukas Gravley
|
c58bab2627
|
Merge pull request #677 from v1v/feature/version
Print version, date and revision
|
2020-09-04 10:35:38 -05:00 |
|
Lucas Gravley
|
b29eb851d3
|
make pretty
|
2020-09-04 10:14:47 -05:00 |
|
Lukas Gravley
|
a3fcb3ea7c
|
Merge pull request #675 from dmerrick/honoring-disable-errors
Making MULTI_STATUS honor DISABLE_ERRORS setting
|
2020-09-04 09:15:06 -05:00 |
|
Lukas Gravley
|
eb36fb7d7c
|
Merge branch 'master' into master
|
2020-09-04 08:53:34 -05:00 |
|
NicolasVuillamy
|
21d75fb89e
|
Groovy traps .nf extension (nextflow) + upgrade npm-groovy-lint
|
2020-09-04 11:54:31 +02:00 |
|
Victor Martinez
|
d3c992bec7
|
Print version, date and revision
|
2020-09-04 09:09:20 +01:00 |
|
Dana Merrick
|
c64c5c8d60
|
Cleaner solution
|
2020-09-03 19:37:10 -04:00 |
|
Dana Merrick
|
dd84550d46
|
Honoring DISABLE_ERRORS
|
2020-09-03 19:23:24 -04:00 |
|
Lucas Gravley
|
c4bbf03935
|
fixing debug
|
2020-09-03 10:12:29 -05:00 |
|
Lucas Gravley
|
d78e707cba
|
no source needed
|
2020-09-03 09:57:20 -05:00 |
|
Lucas Gravley
|
8a51e59be7
|
even easier
|
2020-09-03 09:20:00 -05:00 |
|
Lucas Gravley
|
72fd3e3b87
|
super simple
|
2020-09-03 09:12:49 -05:00 |
|
Lucas Gravley
|
f5e39e5aad
|
fix typo and add check
|
2020-09-02 09:26:01 -05:00 |
|
Josselin
|
f34b084586
|
Add support for black config file
|
2020-09-02 11:28:57 +02:00 |
|
Marco Ferrari
|
de4b8a4fa0
|
Add shfmt and fixes back
|
2020-09-01 00:06:15 +02:00 |
|
Marco Ferrari
|
30763f2575
|
Streamline shell file list building
|
2020-08-31 23:47:48 +02:00 |
|
Lucas Gravley
|
98c2eec42a
|
small clean
|
2020-08-31 14:34:14 -05:00 |
|
Marco Ferrari
|
f5331bdcd3
|
Skip shfmt if no .editorconfig file is present
|
2020-08-31 19:30:50 +02:00 |
|
Marco Ferrari
|
f90c3a289b
|
Check if report output folder exists before listing
|
2020-08-31 19:22:50 +02:00 |
|
Marco Ferrari
|
b3a980e06f
|
Fix bash-exec and terrascan versions
|
2020-08-31 19:22:49 +02:00 |
|
Marco Ferrari
|
0d849cd5e0
|
Lint shell files with shfmt
|
2020-08-31 19:22:49 +02:00 |
|
Lucas Gravley
|
a32d0c1314
|
here
|
2020-08-28 14:08:08 -05:00 |
|
Lucas Gravley
|
b7781ba295
|
forgot quote
|
2020-08-28 11:54:31 -05:00 |
|
Lucas Gravley
|
9be83e0166
|
merge master
|
2020-08-28 11:46:11 -05:00 |
|
Lucas Gravley
|
345a6626e7
|
put it back
|
2020-08-28 11:42:14 -05:00 |
|