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156 commits

Author SHA1 Message Date
Lukas Gravley
84c79a186b
Merge branch 'master' into master 2020-09-22 08:56:09 -05:00
kpj
75a94966d9 Update snakefmt to 0.2.0 2020-09-22 12:10:58 +02:00
Lukas Gravley
03435f7fe1
Merge pull request #750 from github/dependabot/npm_and_yarn/dependencies/typescript-4.0.3 
Bump typescript from 4.0.2 to 4.0.3 in /dependencies
 2020-09-21 08:17:32 -05:00
Lukas Gravley
beaab92479
Merge pull request #751 from github/dependabot/npm_and_yarn/dependencies/eslint-plugin-jest-24.0.2 
Bump eslint-plugin-jest from 24.0.1 to 24.0.2 in /dependencies
 2020-09-21 08:17:16 -05:00
dependabot[bot]
ded9ac164f
Bump asl-validator from 1.7.1 to 1.8.0 in /dependencies 
Bumps [asl-validator](https://github.com/ChristopheBougere/asl-validator) from 1.7.1 to 1.8.0.
- [Release notes](https://github.com/ChristopheBougere/asl-validator/releases)
- [Commits](https://github.com/ChristopheBougere/asl-validator/compare/1.7.1...1.8.0)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-21 06:23:59 +00:00
dependabot[bot]
68d8038f20
Bump eslint-plugin-jest from 24.0.1 to 24.0.2 in /dependencies 
Bumps [eslint-plugin-jest](https://github.com/jest-community/eslint-plugin-jest) from 24.0.1 to 24.0.2.
- [Release notes](https://github.com/jest-community/eslint-plugin-jest/releases)
- [Changelog](https://github.com/jest-community/eslint-plugin-jest/blob/master/CHANGELOG.md)
- [Commits](https://github.com/jest-community/eslint-plugin-jest/compare/v24.0.1...v24.0.2)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-21 06:22:38 +00:00
dependabot[bot]
350bddac1e
Bump typescript from 4.0.2 to 4.0.3 in /dependencies 
Bumps [typescript](https://github.com/Microsoft/TypeScript) from 4.0.2 to 4.0.3.
- [Release notes](https://github.com/Microsoft/TypeScript/releases)
- [Commits](https://github.com/Microsoft/TypeScript/compare/v4.0.2...v4.0.3)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-21 06:22:21 +00:00
dependabot[bot]
04d546b3c1
Bump prettier from 2.1.1 to 2.1.2 in /dependencies 
Bumps [prettier](https://github.com/prettier/prettier) from 2.1.1 to 2.1.2.
- [Release notes](https://github.com/prettier/prettier/releases)
- [Changelog](https://github.com/prettier/prettier/blob/master/CHANGELOG.md)
- [Commits](https://github.com/prettier/prettier/compare/2.1.1...2.1.2)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-16 05:28:34 +00:00
Josselin
2011fe6769 Add missing mypy-extensions and typing_extensions deps 2020-09-15 10:42:07 +02:00
Josselin
4f7afdc72c Black: update hashes in pipfile.lock 2020-09-15 10:11:47 +02:00
Feist Josselin
92ac531386
Update black version 
Fix https://github.com/github/super-linter/issues/722
 2020-09-15 09:57:06 +02:00
Lukas Gravley
71e58eb875
Merge pull request #717 from github/dependabot/npm_and_yarn/dependencies/eslint-7.9.0 
Bump eslint from 7.8.1 to 7.9.0 in /dependencies
 2020-09-14 06:58:13 -05:00
Lukas Gravley
9e807344ea
Merge pull request #719 from github/dependabot/npm_and_yarn/dependencies/stylelint-13.7.1 
Bump stylelint from 13.7.0 to 13.7.1 in /dependencies
 2020-09-14 06:57:43 -05:00
Lukas Gravley
5e8a8c0890
Merge pull request #720 from github/dependabot/npm_and_yarn/dependencies/eslint-plugin-jest-24.0.1 
Bump eslint-plugin-jest from 24.0.0 to 24.0.1 in /dependencies
 2020-09-14 06:57:27 -05:00
dependabot[bot]
168fc32a19
Bump snakemake from 5.24.0 to 5.24.1 in /dependencies 
Bumps [snakemake](https://github.com/snakemake/snakemake) from 5.24.0 to 5.24.1.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Commits](https://github.com/snakemake/snakemake/compare/v5.24.0...v5.24.1)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-14 05:46:42 +00:00
dependabot[bot]
2d5ae73b3c
Bump eslint-plugin-jest from 24.0.0 to 24.0.1 in /dependencies 
Bumps [eslint-plugin-jest](https://github.com/jest-community/eslint-plugin-jest) from 24.0.0 to 24.0.1.
- [Release notes](https://github.com/jest-community/eslint-plugin-jest/releases)
- [Changelog](https://github.com/jest-community/eslint-plugin-jest/blob/master/CHANGELOG.md)
- [Commits](https://github.com/jest-community/eslint-plugin-jest/compare/v24.0.0...v24.0.1)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-14 05:46:24 +00:00
dependabot[bot]
e70b2b1039
Bump stylelint from 13.7.0 to 13.7.1 in /dependencies 
Bumps [stylelint](https://github.com/stylelint/stylelint) from 13.7.0 to 13.7.1.
- [Release notes](https://github.com/stylelint/stylelint/releases)
- [Changelog](https://github.com/stylelint/stylelint/blob/master/CHANGELOG.md)
- [Commits](https://github.com/stylelint/stylelint/compare/13.7.0...13.7.1)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-14 05:46:02 +00:00
dependabot[bot]
39c0ee648e
Bump eslint from 7.8.1 to 7.9.0 in /dependencies 
Bumps [eslint](https://github.com/eslint/eslint) from 7.8.1 to 7.9.0.
- [Release notes](https://github.com/eslint/eslint/releases)
- [Changelog](https://github.com/eslint/eslint/blob/master/CHANGELOG.md)
- [Commits](https://github.com/eslint/eslint/compare/v7.8.1...v7.9.0)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-14 05:45:32 +00:00
Lucas Gravley
23f3709424 fix version 2020-09-11 14:40:22 -05:00
dependabot[bot]
ae2664d0e0
Bump snakefmt from 0.1.4 to 0.1.5 in /dependencies 
Bumps [snakefmt](https://github.com/snakemake/snakefmt) from 0.1.4 to 0.1.5.
- [Release notes](https://github.com/snakemake/snakefmt/releases)
- [Changelog](https://github.com/snakemake/snakefmt/blob/master/CHANGELOG.md)
- [Commits](https://github.com/snakemake/snakefmt/compare/0.1.4...0.1.5)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-11 05:20:08 +00:00
Lukas Gravley
8296c78396
Merge pull request #701 from github/dependabot/npm_and_yarn/dependencies/coffeelint/cli-4.0.0 
Bump @coffeelint/cli from 3.2.10 to 4.0.0 in /dependencies
 2020-09-10 10:21:31 -05:00
Lukas Gravley
dba3bd1f59
Merge pull request #702 from github/dependabot/pip/dependencies/snakemake-5.24.0 
Bump snakemake from 5.23.0 to 5.24.0 in /dependencies
 2020-09-10 10:21:13 -05:00
dependabot[bot]
647f3c2ec5
Bump npm-groovy-lint from 7.6.1 to 7.6.3 in /dependencies 
Bumps [npm-groovy-lint](https://github.com/nvuillam/npm-groovy-lint) from 7.6.1 to 7.6.3.
- [Release notes](https://github.com/nvuillam/npm-groovy-lint/releases)
- [Changelog](https://github.com/nvuillam/npm-groovy-lint/blob/master/CHANGELOG.md)
- [Commits](https://github.com/nvuillam/npm-groovy-lint/compare/v7.6.1...v7.6.3)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-10 05:19:45 +00:00
dependabot[bot]
0ca8a0bae4
Bump snakemake from 5.23.0 to 5.24.0 in /dependencies 
Bumps [snakemake](https://github.com/snakemake/snakemake) from 5.23.0 to 5.24.0.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Commits](https://github.com/snakemake/snakemake/compare/v5.23.0...v5.24.0)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-10 05:19:22 +00:00
dependabot[bot]
5ada8d3058
Bump @coffeelint/cli from 3.2.10 to 4.0.0 in /dependencies 
Bumps [@coffeelint/cli](https://github.com/coffeelint/coffeelint) from 3.2.10 to 4.0.0.
- [Release notes](https://github.com/coffeelint/coffeelint/releases)
- [Changelog](https://github.com/coffeelint/coffeelint/blob/master/CHANGELOG.md)
- [Commits](https://github.com/coffeelint/coffeelint/compare/v3.2.10...v4.0.0)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-10 05:18:32 +00:00
Lucas Gravley
b9aedb4dee fix lock 2020-09-08 10:07:58 -05:00
Lucas Gravley
20c0ebf419 fix lock 2020-09-08 10:04:29 -05:00
Lukas Gravley
95d153605a
Merge pull request #687 from github/dependabot/npm_and_yarn/dependencies/eslint-plugin-jest-24.0.0 
Bump eslint-plugin-jest from 23.20.0 to 24.0.0 in /dependencies
 2020-09-08 09:24:01 -05:00
Lukas Gravley
9cd5ddc1ea
Merge pull request #688 from github/dependabot/pip/dependencies/yq-2.11.0 
Bump yq from 2.10.1 to 2.11.0 in /dependencies
 2020-09-08 09:23:48 -05:00
kpj
8ac1c99a2e [Snakemake] Support both formatting using 'snakefmt' and linting using 'snakemake --lint' 2020-09-08 09:38:48 +02:00
dependabot[bot]
901645f649
Bump npm-groovy-lint from 7.5.4 to 7.6.1 in /dependencies 
Bumps [npm-groovy-lint](https://github.com/nvuillam/npm-groovy-lint) from 7.5.4 to 7.6.1.
- [Release notes](https://github.com/nvuillam/npm-groovy-lint/releases)
- [Changelog](https://github.com/nvuillam/npm-groovy-lint/blob/master/CHANGELOG.md)
- [Commits](https://github.com/nvuillam/npm-groovy-lint/compare/v7.5.4...v7.6.1)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-08 05:41:33 +00:00
kpj
2d7ba8d26b [Snakemake] Add 'snakefmt' to dependencies 2020-09-07 17:12:44 +02:00
dependabot[bot]
8e85f7e8c0
Bump yq from 2.10.1 to 2.11.0 in /dependencies 
Bumps [yq](https://github.com/kislyuk/yq) from 2.10.1 to 2.11.0.
- [Release notes](https://github.com/kislyuk/yq/releases)
- [Changelog](https://github.com/kislyuk/yq/blob/develop/Changes.rst)
- [Commits](https://github.com/kislyuk/yq/compare/v2.10.1...v2.11.0)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-07 05:24:29 +00:00
dependabot[bot]
f7e6c9c504
Bump eslint-plugin-jest from 23.20.0 to 24.0.0 in /dependencies 
Bumps [eslint-plugin-jest](https://github.com/jest-community/eslint-plugin-jest) from 23.20.0 to 24.0.0.
- [Release notes](https://github.com/jest-community/eslint-plugin-jest/releases)
- [Changelog](https://github.com/jest-community/eslint-plugin-jest/blob/master/CHANGELOG.md)
- [Commits](https://github.com/jest-community/eslint-plugin-jest/compare/v23.20.0...v24.0.0)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-07 05:23:45 +00:00
Lukas Gravley
eb36fb7d7c
Merge branch 'master' into master 2020-09-04 08:53:34 -05:00
NicolasVuillamy
21d75fb89e Groovy traps .nf extension (nextflow) + upgrade npm-groovy-lint 2020-09-04 11:54:31 +02:00
dependabot[bot]
977c6d4647
Bump npm-groovy-lint from 7.5.1 to 7.5.3 in /dependencies 
Bumps [npm-groovy-lint](https://github.com/nvuillam/npm-groovy-lint) from 7.5.1 to 7.5.3.
- [Release notes](https://github.com/nvuillam/npm-groovy-lint/releases)
- [Changelog](https://github.com/nvuillam/npm-groovy-lint/blob/master/CHANGELOG.md)
- [Commits](https://github.com/nvuillam/npm-groovy-lint/compare/v7.5.1...v7.5.3)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-04 05:25:16 +00:00
dependabot[bot]
cc9dac5d8d
Bump cfn-lint from 0.35.0 to 0.35.1 in /dependencies 
Bumps [cfn-lint](https://github.com/aws-cloudformation/cfn-python-lint) from 0.35.0 to 0.35.1.
- [Release notes](https://github.com/aws-cloudformation/cfn-python-lint/releases)
- [Changelog](https://github.com/aws-cloudformation/cfn-python-lint/blob/master/CHANGELOG.md)
- [Commits](https://github.com/aws-cloudformation/cfn-python-lint/compare/v0.35.0...v0.35.1)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-03 05:29:30 +00:00
NicolasVuillamy
824ead0805 Upgrade npm-groovy-lint dependency to 7.5.1 2020-09-02 17:56:37 +02:00
dependabot[bot]
2c5075219f
Bump eslint from 7.8.0 to 7.8.1 in /dependencies 
Bumps [eslint](https://github.com/eslint/eslint) from 7.8.0 to 7.8.1.
- [Release notes](https://github.com/eslint/eslint/releases)
- [Changelog](https://github.com/eslint/eslint/blob/master/CHANGELOG.md)
- [Commits](https://github.com/eslint/eslint/compare/v7.8.0...v7.8.1)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-02 05:45:02 +00:00
Lukas Gravley
7d53a77c11
Merge pull request #651 from github/dependabot/npm_and_yarn/dependencies/eslint-7.8.0 
Bump eslint from 7.7.0 to 7.8.0 in /dependencies
 2020-09-01 08:06:36 -05:00
Lukas Gravley
28804c992e
Merge pull request #652 from github/dependabot/npm_and_yarn/dependencies/typescript-eslint/eslint-plugin-4.0.0 
Bump @typescript-eslint/eslint-plugin from 3.10.1 to 4.0.0 in /dependencies
 2020-09-01 08:06:24 -05:00
dependabot[bot]
fe17392607
Bump stylelint from 13.6.1 to 13.7.0 in /dependencies 
Bumps [stylelint](https://github.com/stylelint/stylelint) from 13.6.1 to 13.7.0.
- [Release notes](https://github.com/stylelint/stylelint/releases)
- [Changelog](https://github.com/stylelint/stylelint/blob/master/CHANGELOG.md)
- [Commits](https://github.com/stylelint/stylelint/compare/13.6.1...13.7.0)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-01 05:50:59 +00:00
dependabot[bot]
3daec71f95
Bump @typescript-eslint/eslint-plugin in /dependencies 
Bumps [@typescript-eslint/eslint-plugin](https://github.com/typescript-eslint/typescript-eslint/tree/HEAD/packages/eslint-plugin) from 3.10.1 to 4.0.0.
- [Release notes](https://github.com/typescript-eslint/typescript-eslint/releases)
- [Changelog](https://github.com/typescript-eslint/typescript-eslint/blob/master/packages/eslint-plugin/CHANGELOG.md)
- [Commits](https://github.com/typescript-eslint/typescript-eslint/commits/v4.0.0/packages/eslint-plugin)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-01 05:49:44 +00:00
dependabot[bot]
d985638061
Bump eslint from 7.7.0 to 7.8.0 in /dependencies 
Bumps [eslint](https://github.com/eslint/eslint) from 7.7.0 to 7.8.0.
- [Release notes](https://github.com/eslint/eslint/releases)
- [Changelog](https://github.com/eslint/eslint/blob/master/CHANGELOG.md)
- [Commits](https://github.com/eslint/eslint/compare/v7.7.0...v7.8.0)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-01 05:46:18 +00:00
dependabot[bot]
51354c005c
Bump npm-groovy-lint from 7.4.2 to 7.4.4 in /dependencies 
Bumps [npm-groovy-lint](https://github.com/nvuillam/npm-groovy-lint) from 7.4.2 to 7.4.4.
- [Release notes](https://github.com/nvuillam/npm-groovy-lint/releases)
- [Changelog](https://github.com/nvuillam/npm-groovy-lint/blob/master/CHANGELOG.md)
- [Commits](https://github.com/nvuillam/npm-groovy-lint/compare/v7.4.2...v7.4.4)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-08-31 05:42:00 +00:00
Lukas Gravley
c632d56548
Merge pull request #632 from cesar-rodriguez/terrascan-v1 
Updates to support Terrascan v1.0.0+
 2020-08-27 08:54:31 -05:00
Lukas Gravley
9286523abf
Merge pull request #633 from github/dependabot/pip/dependencies/black-20.8b1 
Bump black from 19.10b0 to 20.8b1 in /dependencies
 2020-08-27 08:50:28 -05:00
dependabot[bot]
1db115949f
Bump npm-groovy-lint from 7.4.1 to 7.4.2 in /dependencies 
Bumps [npm-groovy-lint](https://github.com/nvuillam/npm-groovy-lint) from 7.4.1 to 7.4.2.
- [Release notes](https://github.com/nvuillam/npm-groovy-lint/releases)
- [Changelog](https://github.com/nvuillam/npm-groovy-lint/blob/master/CHANGELOG.md)
- [Commits](https://github.com/nvuillam/npm-groovy-lint/compare/v7.4.1...v7.4.2)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-08-27 05:49:46 +00:00
dependabot[bot]
bfd18482c2
Bump black from 19.10b0 to 20.8b1 in /dependencies 
Bumps [black](https://github.com/psf/black) from 19.10b0 to 20.8b1.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/master/CHANGES.md)
- [Commits](https://github.com/psf/black/commits)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-08-27 05:49:34 +00:00