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710 commits

Author SHA1 Message Date
kpj
6f6e6e9d03 [Snakemake] Remove wrong function argument 2020-09-08 11:26:48 +02:00
kpj
581f07a32b [Snakemake] Fix 'LINTER_NAME' 2020-09-08 10:19:56 +02:00
kpj
8ac1c99a2e [Snakemake] Support both formatting using 'snakefmt' and linting using 'snakemake --lint' 2020-09-08 09:38:48 +02:00
kpj
ad262196ba [Snakemake] Also lint 'Snakefile' (without '.smk' suffix) 2020-09-08 09:11:54 +02:00
kpj
53f551c8b0 [Snakemake] Add '--config' parameter to 'snakefmt' calls 2020-09-07 17:26:58 +02:00
kpj
0c5029bf67 [Snakemake] Actually run 'snakefmt' tests 2020-09-07 17:20:56 +02:00
kpj
1e453be7fa [Snakemake] Update codebase 2020-09-07 16:49:07 +02:00
NicolasVuillamy
04c93b4ff5 Add management of FILTER_REGEX_INCLUDE and FILTER_REGEX_EXCLUDE options 2020-09-05 12:25:44 +02:00
Lukas Gravley
828de134a9
this should be right 2020-09-04 13:22:01 -05:00
Goryudyuma(Kei.Matsumoto)
b31b696e00
Just filter the .git folder 2020-09-05 03:08:26 +09:00
Lukas Gravley
c58bab2627
Merge pull request #677 from v1v/feature/version 
Print version, date and revision
 2020-09-04 10:35:38 -05:00
Lucas Gravley
b29eb851d3 make pretty 2020-09-04 10:14:47 -05:00
Lukas Gravley
a3fcb3ea7c
Merge pull request #675 from dmerrick/honoring-disable-errors 
Making MULTI_STATUS honor DISABLE_ERRORS setting
 2020-09-04 09:15:06 -05:00
Lukas Gravley
eb36fb7d7c
Merge branch 'master' into master 2020-09-04 08:53:34 -05:00
NicolasVuillamy
21d75fb89e Groovy traps .nf extension (nextflow) + upgrade npm-groovy-lint 2020-09-04 11:54:31 +02:00
Victor Martinez
d3c992bec7
Print version, date and revision 2020-09-04 09:09:20 +01:00
Dana Merrick
c64c5c8d60 Cleaner solution 2020-09-03 19:37:10 -04:00
Dana Merrick
dd84550d46 Honoring DISABLE_ERRORS 2020-09-03 19:23:24 -04:00
Lucas Gravley
c4bbf03935 fixing debug 2020-09-03 10:12:29 -05:00
Lucas Gravley
d78e707cba no source needed 2020-09-03 09:57:20 -05:00
Lucas Gravley
a3c8b22e2c fix duplicate names 2020-09-03 09:56:34 -05:00
Lucas Gravley
6ac933dc8c fix print 2020-09-03 09:34:39 -05:00
Lucas Gravley
165b29cbe1 fix array 2020-09-03 09:21:22 -05:00
Lucas Gravley
8a51e59be7 even easier 2020-09-03 09:20:00 -05:00
Lucas Gravley
72fd3e3b87 super simple 2020-09-03 09:12:49 -05:00
Lukas Gravley
b012d72952
Merge pull request #662 from montyly/dev-black-config-file 
Add support for black config file
 2020-09-02 09:57:44 -05:00
Lucas Gravley
f5e39e5aad fix typo and add check 2020-09-02 09:26:01 -05:00
Lucas Gravley
a756e40157 typo 2020-09-02 09:07:39 -05:00
Lucas Gravley
6040030c8a Adding more paths to ignore 2020-09-02 09:05:36 -05:00
Josselin
f34b084586 Add support for black config file 2020-09-02 11:28:57 +02:00
Marco Ferrari
de4b8a4fa0 Add shfmt and fixes back 2020-09-01 00:06:15 +02:00
Marco Ferrari
30763f2575 Streamline shell file list building 2020-08-31 23:47:48 +02:00
Lucas Gravley
98c2eec42a small clean 2020-08-31 14:34:14 -05:00
Marco Ferrari
228a86e5c0 Remove duplicate output lines when checking for ZSH scripts 2020-08-31 19:56:49 +02:00
Marco Ferrari
798311822a Add file path to ZSH warning messages 2020-08-31 19:47:05 +02:00
Marco Ferrari
833dcb8bd8 Don't check zsh files with shfmt 2020-08-31 19:31:22 +02:00
Marco Ferrari
f5331bdcd3 Skip shfmt if no .editorconfig file is present 2020-08-31 19:30:50 +02:00
Marco Ferrari
f90c3a289b Check if report output folder exists before listing 2020-08-31 19:22:50 +02:00
Marco Ferrari
644e69131b Fix shfmt test 2020-08-31 19:22:50 +02:00
Marco Ferrari
b3a980e06f Fix bash-exec and terrascan versions 2020-08-31 19:22:49 +02:00
Marco Ferrari
0d849cd5e0 Lint shell files with shfmt 2020-08-31 19:22:49 +02:00
Lucas Gravley
13e87dd021 lots of cleanup 2020-08-31 11:51:03 -05:00
Lucas Gravley
958f70fe67 its real picky 2020-08-31 10:11:12 -05:00
Lucas Gravley
a32d0c1314 here 2020-08-28 14:08:08 -05:00
Lucas Gravley
a9bc2068f7 they come in pairs 2020-08-28 13:50:23 -05:00
Lucas Gravley
633418aa8a fix var 2020-08-28 13:47:15 -05:00
Lucas Gravley
e9c3938982 fix tty issues 2020-08-28 13:44:11 -05:00
Lucas Gravley
b7781ba295 forgot quote 2020-08-28 11:54:31 -05:00
Lucas Gravley
9be83e0166 merge master 2020-08-28 11:46:11 -05:00
Lucas Gravley
345a6626e7 put it back 2020-08-28 11:42:14 -05:00
Lukas Gravley
10f44786ce
Merge pull request #641 from github/isExec 
adding bash-exec
 2020-08-28 10:37:43 -05:00
Lucas Gravley
a35df1c943 its friday 2020-08-28 10:15:44 -05:00
Lucas Gravley
40fddbad79 get name even 2020-08-28 10:12:02 -05:00
Lucas Gravley
920f7b673b adding warning 2020-08-28 10:08:21 -05:00
Lucas Gravley
0404c39203 adding exec 2020-08-28 09:56:53 -05:00
Lucas Gravley
d9f35b2af7 more cleanupo 2020-08-27 14:26:05 -05:00
Lucas Gravley
4bf0aee923 Make it happy 2020-08-27 14:12:24 -05:00
Lucas Gravley
94e03d50ac better loop 2020-08-27 14:01:43 -05:00
Lucas Gravley
9cae4c7f6d better 2020-08-27 09:00:54 -05:00
Cesar Rodriguez
815f8236dd Updates scan command for Terrascan 2020-08-26 22:53:00 -04:00
Cesar Rodriguez
e060679ea8 Updates terrascan command 2020-08-26 22:53:00 -04:00
Eddy Nakamura
9c44d2d503 changing command - 2 2020-08-26 11:58:28 -03:00
Eddy Nakamura
b83e4c99ed updating command 2020-08-26 11:42:05 -03:00
Lucas Gravley
454fa09b81 Fixed it? 2020-08-26 08:50:53 -05:00
Eddy Nakamura
6157d8a2ae trying to solve command issue 2020-08-25 19:52:04 -03:00
Eddy Nakamura
a766e5f624 updating format command 2020-08-25 19:20:02 -03:00
Lucas Gravley
9b129f4873 fixed it again 2020-08-25 14:21:22 -05:00
Lukas Gravley
c2e207f643
Merge branch 'master' into feature/csharp-lint 2020-08-25 13:09:51 -05:00
Lucas Gravley
add83739a7 adding test folders 2020-08-25 13:07:44 -05:00
Lucas Gravley
ae9cb55eec adding more folders to ignore 2020-08-25 10:32:05 -05:00
Lukas Gravley
fb70f94bd3
Merge branch 'master' into hadolintLinter 2020-08-25 10:06:43 -05:00
Lucas Gravley
ee3200654a adding hadolint configuration 2020-08-25 09:55:30 -05:00
Lucas Gravley
cb41ae47fa adding feature 2020-08-25 09:05:23 -05:00
Eddy Nakamura
79dccdf62b updating command 2020-08-24 21:58:25 -03:00
Eddy Nakamura
efe1f95c87 updating linter script 2020-08-24 21:46:55 -03:00
Eddy Nakamura
accf805de4 adding files to buildFileList and linter 2020-08-24 21:43:50 -03:00
Eddy Nakamura
24ce47014d Adding C# lint 2020-08-24 21:40:02 -03:00
Lucas Gravley
e7ff2d0e66 fixed it 2020-08-24 14:22:39 -05:00
Lucas Gravley
a1f76a8e2b fix version 2020-08-24 14:17:44 -05:00
Lucas Gravley
254db11e08 better... faster... stronger... 2020-08-24 14:12:37 -05:00
Lucas Gravley
3fda83377a add quotes 2020-08-24 13:56:09 -05:00
Lucas Gravley
6d7c89b7d7 fix struct 2020-08-24 11:16:22 -05:00
Lucas Gravley
bce238d392 adding some spaget 2020-08-24 11:11:10 -05:00
Lucas Gravley
815ff9d520 Adding more 2020-08-20 13:03:40 -05:00
Lucas Gravley
17a4bd2271 adding some dope code 2020-08-20 12:58:11 -05:00
Lucas Gravley
1f2c569c21 adding black 2020-08-20 09:44:11 -05:00
Lucas Gravley
b13ac9a14f quotes 2020-08-19 14:18:49 -05:00
Lucas Gravley
54abac63b3 fix logic hole 2020-08-19 14:14:41 -05:00
Lukas Gravley
5970f28f6b
Merge pull request #588 from assignUser/chktex 
Add LaTeX support
 2020-08-19 13:12:11 -05:00
assignUser
8224e9e6e5 fix exit code 2020-08-19 17:51:07 +00:00
assignUser
dcd81f09d0 fix global config warning 2020-08-19 14:28:41 +00:00
assignUser
bad32e6f53 adress review 2020-08-19 14:16:59 +00:00
assignUser
b42ba5c72a quiet chktex 2020-08-19 01:11:34 +00:00
assignUser
e8db83e2dd
Update linter.sh 2020-08-19 01:03:12 +02:00
assignUser
e1bc1df9e7 add latex support 2020-08-18 22:54:32 +00:00
Lukas Gravley
308c1fd5aa
Merge pull request #569 from assignUser/master 
Add lintr support to super-lint
 2020-08-18 16:08:35 -05:00
assignUser
cc903ad583 Adjust doc about exclusions 2020-08-18 16:11:26 +00:00
Lucas Gravley
f5752cfd45 adding the right var 2020-08-18 10:09:18 -05:00
Lucas Gravley
1f55b422da fix folder for persistance 2020-08-18 09:51:38 -05:00
assignUser
3d4292f067 alphabetize 2020-08-17 19:47:03 +00:00
assignUser
c2f35fc0b3
Update lib/worker.sh 
Co-authored-by: Lukas Gravley <admiralawkbar@github.com>
 2020-08-17 21:45:16 +02:00
assignUser
6372885cd0 relative exclusions work, adressed comments 2020-08-17 16:27:31 +00:00
assignUser
9ec761f61c prereview 2020-08-17 15:34:55 +00:00
assignUser
727f982bf9 typo 2020-08-17 13:38:00 +00:00
assignUser
4f4784fd41 fix displayed lintr command 2020-08-17 13:30:39 +00:00
assignUser
f9b81243db add quotes 2020-08-17 12:14:15 +00:00
assignUser
0f47f68445 add .lintr detection 2020-08-17 12:01:25 +00:00
Julie Garrone
1022ad20f5 Fix indentation in comment and table 2020-08-17 09:59:09 +02:00
assignUser
6bb65aaa2c lowercase file_type 2020-08-16 13:31:23 +00:00
assignUser
7632f64664 ad lintr to TestCodebase 2020-08-16 12:44:37 +00:00
assignUser
527334883e adjust lint command 2020-08-16 00:18:31 +00:00
assignUser
8baec3bc77 fix 2020-08-15 23:43:42 +00:00
assignUser
a745a38df9 add apks 2020-08-15 22:53:08 +00:00
assignUser
0933aebc7a add R with edgecases 2020-08-15 19:29:22 +00:00
Julie Garrone
c043e87ef1 Fix VALIDATE variables name for Dockerfile linters 2020-08-14 10:38:26 +02:00
Lucas Gravley
0d3547c35b more quotes 2020-08-13 12:48:00 -05:00
Lucas Gravley
c7f28b9b7f backwards 2020-08-13 12:44:55 -05:00
Lucas Gravley
999413d224 adding more tests and cool logic 2020-08-13 12:40:21 -05:00
Lukas Gravley
f72cd683d7
Merge pull request #560 from GaboFDC/gf_sass 
Add sass and scss files to stylelint
 2020-08-13 12:22:04 -05:00
Lukas Gravley
b63730f8fb
Merge pull request #555 from GaboFDC/gf_better_validate_logic 
Better VALIDATE_[LANGUAGE] vars logic
 2020-08-13 12:21:08 -05:00
Lukas Gravley
118ab2ce5f
Merge pull request #563 from julie-garrone/fix-dockerfilelintrc-ignored-bug 
Fix .dockerfilelintrc is ignored bug
 2020-08-13 12:20:47 -05:00
Julie Garrone
f289ebd074 Fix dockerfile linters FILE_NAME variable 2020-08-13 18:03:13 +02:00
Lucas Gravley
345862a029 smallFix 2020-08-13 10:06:11 -05:00
Gabo
50cf06f562 Add sass and scss 2020-08-13 07:58:06 -05:00
Gabo
d05f179506 Add logic to include/exclude linters 2020-08-11 21:05:01 -05:00
Gabo
cb2cf0eb49 Fix spell 2020-08-11 21:04:33 -05:00
Lucas Gravley
0f88a9ea5d More verbose 2020-08-11 13:27:30 -05:00
Lucas Gravley
9856082087 add sql goods 2020-08-11 12:30:00 -05:00
Lukas Gravley
717f652dc9
super slick 2020-08-11 08:55:42 -05:00
Eric Nemchik
a4d7e4831a Add missing editorconfig-checker to linter array 2020-08-10 09:45:40 -05:00
Ryan Moran
200f699c15 Adds --external-sources option for shellcheck 
Shellcheck supports a `--external-sources` option that allows directives
like the follow to pass linting.

  ```
  # shellcheck source=SCRIPTDIR/some/source/script.sh`
  source "$(dirname "${BASH_SOURCE[0]}")/some/source/script.sh"
  ```
Without this option, we will see lots of spurious errors from shellcheck
like the following.

  ```
  # shellcheck source=SCRIPTDIR/some/source/script.sh`
  source "$(dirname "${BASH_SOURCE[0]}")/some/source/script.sh"
         ^-- SC1091: Not following: SCRIPTDIR/some/source/script.sh: openBinaryFile: does not exist (No such file or directory)
  ```

It looks like it [may be
possible](https://github.com/koalaman/shellcheck/issues/1818) to include
this option in a future version of shellcheck through the .shellcheckrc
configuration file, given that this issue is resolved, and that
super-linter supports .shellcheckrc as a configuration file for
shellcheck.
 2020-08-07 15:18:40 -04:00
Lukas Gravley
1746012dab
Merge pull request #534 from marghidanu/master 
PerlCritic basic implementation
 2020-08-07 11:56:09 -05:00
Lukas Gravley
d082f4f6e4
Merge pull request #529 from github/BetterTests 
Adding all codebase scan test
 2020-08-07 09:22:17 -05:00
Lukas Gravley
9ea04e4012
Merge pull request #531 from GaboFDC/gf_improve_eslint 
Improve eslint
 2020-08-07 08:34:13 -05:00
Tudor Marghidanu
523b14a2df PerlCritic basic implementation 2020-08-07 14:58:40 +02:00
Gabo
9dc7afd67f Allow to set markdownlint config file 2020-08-07 00:51:59 -05:00
Gabo
a186477c8b Skip node_modules from finds 2020-08-06 19:56:36 -05:00
Lucas Gravley
f88db68011 remove space 2020-08-06 15:07:34 -05:00
Lucas Gravley
c9ef1fcb66 Saving it 2020-08-06 12:01:36 -05:00
Lukas Gravley
fc9654924f
Merge pull request #526 from github/fix-editorconfig 
Editorconfig error reporting fix
 2020-08-06 11:27:47 -05:00
Lucas Gravley
5ffa5518db fixed it real good 2020-08-06 10:56:06 -05:00
Lucas Gravley
f5532f9cd6 put them back lol 2020-08-06 10:53:42 -05:00
Lucas Gravley
2beb30e939 cleanup 2020-08-06 10:42:57 -05:00
Lucas Gravley
5b44f9d066 Adding secondary name 2020-08-06 10:30:10 -05:00
Eric Nemchik
e527b47e80
Update linter.sh 2020-08-06 10:25:45 -05:00
Lucas Gravley
54fe9b762b Adding the look 2020-08-06 09:39:45 -05:00
Lucas Gravley
3a1535e413 fix typo 2020-08-05 14:53:48 -05:00
Lucas Gravley
c3e5cb0ef1 Fix the pathing 2020-08-05 14:37:38 -05:00
Lucas Gravley
3d7e7d1073 Fix checkstyle 2020-08-05 14:28:43 -05:00
Lucas Gravley
eaca27d508 Fix typo 2020-08-05 13:38:35 -05:00