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55 commits

Author SHA1 Message Date
dependabot[bot]
aeaca1dfae
Bump snakemake from 6.12.3 to 6.13.1 in /dependencies/python (#2380)
Bumps [snakemake](https://github.com/snakemake/snakemake) from 6.12.3 to 6.13.1.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Commits](https://github.com/snakemake/snakemake/compare/v6.12.3...v6.13.1)

---
updated-dependencies:
- dependency-name: snakemake
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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2022-01-24 09:11:39 -06:00
dependabot[bot]
aed5376439
Bump gitpython from 3.1.24 to 3.1.26 in /dependencies/python (#2351)
Bumps [gitpython](https://github.com/gitpython-developers/GitPython) from 3.1.24 to 3.1.26.
- [Release notes](https://github.com/gitpython-developers/GitPython/releases)
- [Changelog](https://github.com/gitpython-developers/GitPython/blob/main/CHANGES)
- [Commits](https://github.com/gitpython-developers/GitPython/compare/3.1.24...3.1.26)

---
updated-dependencies:
- dependency-name: gitpython
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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2022-01-18 13:57:10 -06:00
dependabot[bot]
0651230a6e Bump pyrsistent from 0.18.0 to 0.18.1 in /dependencies/python
Bumps [pyrsistent](https://github.com/tobgu/pyrsistent) from 0.18.0 to 0.18.1.
- [Release notes](https://github.com/tobgu/pyrsistent/releases)
- [Changelog](https://github.com/tobgu/pyrsistent/blob/master/CHANGES.txt)
- [Commits](https://github.com/tobgu/pyrsistent/compare/v0.18.0...v0.18.1)

---
updated-dependencies:
- dependency-name: pyrsistent
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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2022-01-18 14:08:52 -05:00
dependabot[bot]
53ad488764
Bump urllib3 from 1.26.7 to 1.26.8 in /dependencies/python (#2334)
Bumps [urllib3](https://github.com/urllib3/urllib3) from 1.26.7 to 1.26.8.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/1.26.8/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/1.26.7...1.26.8)

---
updated-dependencies:
- dependency-name: urllib3
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-01-11 12:01:58 -06:00
Jameel Al-Aziz
7e1683407d Update Dependabot for python virtual envs
* Simplify virtualenv installation to use multiple requirements files in
  a single directory. This eliminates the packages.txt file and provides
  an easier path to adding new tools in the future. It also allows us to
  simplify the dependenabot configuration as all requirements files are
  in a single directory.
* Update dependabot.yml to point to the new Python dependencies folder.
2022-01-11 10:05:56 -05:00
Renamed from dependencies/python/snakemake/requirements.txt (Browse further)