Lukas Gravley
18c32b7dca
Merge pull request #766 from mshimokura/editorconfig_lintall
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Lint all changed files with editorconfig-checker
2020-09-28 08:38:51 -05:00
Lukas Gravley
167af0854e
Merge pull request #767 from kpj/master
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Fix various Snakemake related issues
2020-09-28 08:36:48 -05:00
Lukas Gravley
6482f45462
Merge pull request #769 from ferrarimarco/remove-read-only-change-flag
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Remove READ_ONLY_CHANGE_FLAG flag and fix .editorconfig and shfmt tests
2020-09-28 08:35:58 -05:00
Marco Ferrari
d43fcdc666
Sort environment variables when printing debug info
2020-09-26 00:51:53 +02:00
Marco Ferrari
31fd755fd7
Remove unneeded READ_ONLY_CHANGE_FLAG
2020-09-25 23:41:47 +02:00
Marco Ferrari
63f23368b8
Remove unneeded READ_ONLY_CHANGE_FLAG
2020-09-25 21:25:00 +02:00
kpj
9e7c84fbbb
Fix various Snakemake related variable names
2020-09-24 16:06:12 +02:00
kpj
40f995365b
Fix Snakefile regex
2020-09-24 15:55:47 +02:00
kpj
71ede6ccca
Add missing 'GetLinterRules' calls
2020-09-24 15:54:24 +02:00
Michael Shimokura
12543b369b
Lint all files with editorconfig-checker
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Since .editorconfig configuration files _could_ apply to any file, we
should pass in the RAW_FILE_ARRAY to it. This ensures that files of all
types are linted by editorconfig-checker.
2020-09-24 09:02:24 -04:00
Lukas Gravley
84c79a186b
Merge branch 'master' into master
2020-09-22 08:56:09 -05:00
Marco Ferrari
f24f52be11
Lint with Kubeval and fixes
2020-09-22 01:49:01 +02:00
Lukas Gravley
f290145dfa
Update linter.sh
2020-09-21 13:51:46 -05:00
Lukas Gravley
06cb2ebb6f
Update linter.sh
2020-09-21 13:50:58 -05:00
Marco Ferrari
6168112f61
Fix ERROR_ON_MISSING_EXEC_BIT initialization
2020-09-21 14:43:44 +02:00
kpj
6f6004275f
In anticipation of snakefmt 0.1.6, start using --check and --compact-diff
2020-09-18 16:32:01 +02:00
Marco Ferrari
5cefb9209f
Make bash-exec errors or warnings configurable
2020-09-15 22:40:12 +02:00
NicolasVuillamy
e470df5431
Fix file filters: Reorder arguments to LintCodeBase function
2020-09-15 08:15:53 +02:00
kpj
5b51c2bd92
Use '--compact-diff' instead of '--diff' for snakefmt
2020-09-14 09:36:33 +02:00
Joseph Marino
2698bdfbc3
Fixed a typo in code comments
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Replaced the term "CSS" with "HTML" in code comments for the
HTML_LINTER_RULES variable.
2020-09-11 15:16:55 -04:00
kpj
11f437df4c
Fix usage of FILE_ARRAY_SNAKEMAKE
2020-09-11 13:51:15 +02:00
kpj
e1b2fd6085
Fix bug in Snakemake file regex
2020-09-11 13:49:05 +02:00
kpj
ec0577ae5b
Add Snakemake to language array
2020-09-11 13:31:57 +02:00
Lukas Gravley
79b055babe
Merge pull request #707 from ferrarimarco/fix-node-modules
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Fix list files function typos
2020-09-10 11:21:54 -05:00
Lucas Gravley
b232c5b970
this is the way./..
2020-09-10 10:34:04 -05:00
Lucas Gravley
f432ef2116
fix spaces
2020-09-10 10:25:56 -05:00
Marco Ferrari
ad9c0081f4
Fix list files function typos
2020-09-10 12:10:12 +02:00
NicolasVuillamy
27afc50d60
Set GROOVY Linter failure level to warning
2020-09-10 11:07:05 +02:00
NicolasVuillamy
c86e90b3d0
Solve conflicts + format
2020-09-09 20:22:32 +02:00
NicolasVuillamy
f072bc5c8d
Merge remote-tracking branch 'github/master'
2020-09-09 20:18:21 +02:00
Lukas Gravley
9f3eb7d454
Merge pull request #679 from Goryudyuma/just-filter-the-git-folder
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Just filter the .git folder
2020-09-09 10:53:19 -05:00
Lucas Gravley
b5d42bf181
this makes no sense
2020-09-09 10:37:02 -05:00
Lucas Gravley
880380d118
if i could only read
2020-09-09 10:18:12 -05:00
Lucas Gravley
dbd4cd673d
this has to be right
2020-09-09 10:04:21 -05:00
Lucas Gravley
eb67d9b9c6
fix that dumb action
2020-09-09 09:28:39 -05:00
Lucas Gravley
bae75b456b
more fix
2020-09-09 09:24:57 -05:00
Lucas Gravley
17c3ded695
i forgot how this works
2020-09-09 09:24:27 -05:00
Lukas Gravley
e9811c85d6
Update lib/worker.sh
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yes
Co-authored-by: Goryudyuma(Kei.Matsumoto) <6211370+Goryudyuma@users.noreply.github.com>
2020-09-08 16:00:12 -05:00
Lucas Gravley
fd42f4b3fb
science...
2020-09-08 15:45:17 -05:00
Marco Ferrari
83666ffaba
Fix getting filename for hidden files
2020-09-08 19:20:49 +02:00
Lucas Gravley
0e5f996c3c
look at folders and not file names
2020-09-08 12:16:59 -05:00
Lucas Gravley
a0d4012b67
like this?
2020-09-08 12:01:17 -05:00
Lucas Gravley
53995952e0
Merge branch 'master' into just-filter-the-git-folder
2020-09-08 10:43:59 -05:00
Lucas Gravley
a6c9656015
fixing vars
2020-09-08 09:47:57 -05:00
kpj
6f6e6e9d03
[Snakemake] Remove wrong function argument
2020-09-08 11:26:48 +02:00
kpj
581f07a32b
[Snakemake] Fix 'LINTER_NAME'
2020-09-08 10:19:56 +02:00
kpj
8ac1c99a2e
[Snakemake] Support both formatting using 'snakefmt' and linting using 'snakemake --lint'
2020-09-08 09:38:48 +02:00
kpj
ad262196ba
[Snakemake] Also lint 'Snakefile' (without '.smk' suffix)
2020-09-08 09:11:54 +02:00
kpj
53f551c8b0
[Snakemake] Add '--config' parameter to 'snakefmt' calls
2020-09-07 17:26:58 +02:00
kpj
0c5029bf67
[Snakemake] Actually run 'snakefmt' tests
2020-09-07 17:20:56 +02:00
kpj
1e453be7fa
[Snakemake] Update codebase
2020-09-07 16:49:07 +02:00
NicolasVuillamy
04c93b4ff5
Add management of FILTER_REGEX_INCLUDE and FILTER_REGEX_EXCLUDE options
2020-09-05 12:25:44 +02:00
Lukas Gravley
828de134a9
this should be right
2020-09-04 13:22:01 -05:00
Goryudyuma(Kei.Matsumoto)
b31b696e00
Just filter the .git folder
2020-09-05 03:08:26 +09:00
Lukas Gravley
c58bab2627
Merge pull request #677 from v1v/feature/version
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Print version, date and revision
2020-09-04 10:35:38 -05:00
Lucas Gravley
b29eb851d3
make pretty
2020-09-04 10:14:47 -05:00
Lukas Gravley
a3fcb3ea7c
Merge pull request #675 from dmerrick/honoring-disable-errors
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Making MULTI_STATUS honor DISABLE_ERRORS setting
2020-09-04 09:15:06 -05:00
Lukas Gravley
eb36fb7d7c
Merge branch 'master' into master
2020-09-04 08:53:34 -05:00
NicolasVuillamy
21d75fb89e
Groovy traps .nf extension (nextflow) + upgrade npm-groovy-lint
2020-09-04 11:54:31 +02:00
Victor Martinez
d3c992bec7
Print version, date and revision
2020-09-04 09:09:20 +01:00
Dana Merrick
c64c5c8d60
Cleaner solution
2020-09-03 19:37:10 -04:00
Dana Merrick
dd84550d46
Honoring DISABLE_ERRORS
2020-09-03 19:23:24 -04:00
Lucas Gravley
c4bbf03935
fixing debug
2020-09-03 10:12:29 -05:00
Lucas Gravley
d78e707cba
no source needed
2020-09-03 09:57:20 -05:00
Lucas Gravley
a3c8b22e2c
fix duplicate names
2020-09-03 09:56:34 -05:00
Lucas Gravley
6ac933dc8c
fix print
2020-09-03 09:34:39 -05:00
Lucas Gravley
165b29cbe1
fix array
2020-09-03 09:21:22 -05:00
Lucas Gravley
8a51e59be7
even easier
2020-09-03 09:20:00 -05:00
Lucas Gravley
72fd3e3b87
super simple
2020-09-03 09:12:49 -05:00
Lukas Gravley
b012d72952
Merge pull request #662 from montyly/dev-black-config-file
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Add support for black config file
2020-09-02 09:57:44 -05:00
Lucas Gravley
f5e39e5aad
fix typo and add check
2020-09-02 09:26:01 -05:00
Lucas Gravley
a756e40157
typo
2020-09-02 09:07:39 -05:00
Lucas Gravley
6040030c8a
Adding more paths to ignore
2020-09-02 09:05:36 -05:00
Josselin
f34b084586
Add support for black config file
2020-09-02 11:28:57 +02:00
Marco Ferrari
de4b8a4fa0
Add shfmt and fixes back
2020-09-01 00:06:15 +02:00
Marco Ferrari
30763f2575
Streamline shell file list building
2020-08-31 23:47:48 +02:00
Lucas Gravley
98c2eec42a
small clean
2020-08-31 14:34:14 -05:00
Marco Ferrari
228a86e5c0
Remove duplicate output lines when checking for ZSH scripts
2020-08-31 19:56:49 +02:00
Marco Ferrari
798311822a
Add file path to ZSH warning messages
2020-08-31 19:47:05 +02:00
Marco Ferrari
833dcb8bd8
Don't check zsh files with shfmt
2020-08-31 19:31:22 +02:00
Marco Ferrari
f5331bdcd3
Skip shfmt if no .editorconfig file is present
2020-08-31 19:30:50 +02:00
Marco Ferrari
f90c3a289b
Check if report output folder exists before listing
2020-08-31 19:22:50 +02:00
Marco Ferrari
644e69131b
Fix shfmt test
2020-08-31 19:22:50 +02:00
Marco Ferrari
b3a980e06f
Fix bash-exec and terrascan versions
2020-08-31 19:22:49 +02:00
Marco Ferrari
0d849cd5e0
Lint shell files with shfmt
2020-08-31 19:22:49 +02:00
Lucas Gravley
13e87dd021
lots of cleanup
2020-08-31 11:51:03 -05:00
Lucas Gravley
958f70fe67
its real picky
2020-08-31 10:11:12 -05:00
Lucas Gravley
a32d0c1314
here
2020-08-28 14:08:08 -05:00
Lucas Gravley
a9bc2068f7
they come in pairs
2020-08-28 13:50:23 -05:00
Lucas Gravley
633418aa8a
fix var
2020-08-28 13:47:15 -05:00
Lucas Gravley
e9c3938982
fix tty issues
2020-08-28 13:44:11 -05:00
Lucas Gravley
b7781ba295
forgot quote
2020-08-28 11:54:31 -05:00
Lucas Gravley
9be83e0166
merge master
2020-08-28 11:46:11 -05:00
Lucas Gravley
345a6626e7
put it back
2020-08-28 11:42:14 -05:00
Lukas Gravley
10f44786ce
Merge pull request #641 from github/isExec
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adding bash-exec
2020-08-28 10:37:43 -05:00
Lucas Gravley
a35df1c943
its friday
2020-08-28 10:15:44 -05:00
Lucas Gravley
40fddbad79
get name even
2020-08-28 10:12:02 -05:00
Lucas Gravley
920f7b673b
adding warning
2020-08-28 10:08:21 -05:00
Lucas Gravley
0404c39203
adding exec
2020-08-28 09:56:53 -05:00
Lucas Gravley
d9f35b2af7
more cleanupo
2020-08-27 14:26:05 -05:00
Lucas Gravley
4bf0aee923
Make it happy
2020-08-27 14:12:24 -05:00
Lucas Gravley
94e03d50ac
better loop
2020-08-27 14:01:43 -05:00
Lucas Gravley
9cae4c7f6d
better
2020-08-27 09:00:54 -05:00
Cesar Rodriguez
815f8236dd
Updates scan command for Terrascan
2020-08-26 22:53:00 -04:00
Cesar Rodriguez
e060679ea8
Updates terrascan command
2020-08-26 22:53:00 -04:00
Eddy Nakamura
9c44d2d503
changing command - 2
2020-08-26 11:58:28 -03:00
Eddy Nakamura
b83e4c99ed
updating command
2020-08-26 11:42:05 -03:00
Lucas Gravley
454fa09b81
Fixed it?
2020-08-26 08:50:53 -05:00
Eddy Nakamura
6157d8a2ae
trying to solve command issue
2020-08-25 19:52:04 -03:00
Eddy Nakamura
a766e5f624
updating format command
2020-08-25 19:20:02 -03:00
Lucas Gravley
9b129f4873
fixed it again
2020-08-25 14:21:22 -05:00
Lukas Gravley
c2e207f643
Merge branch 'master' into feature/csharp-lint
2020-08-25 13:09:51 -05:00
Lucas Gravley
add83739a7
adding test folders
2020-08-25 13:07:44 -05:00
Lucas Gravley
ae9cb55eec
adding more folders to ignore
2020-08-25 10:32:05 -05:00
Lukas Gravley
fb70f94bd3
Merge branch 'master' into hadolintLinter
2020-08-25 10:06:43 -05:00
Lucas Gravley
ee3200654a
adding hadolint configuration
2020-08-25 09:55:30 -05:00
Lucas Gravley
cb41ae47fa
adding feature
2020-08-25 09:05:23 -05:00
Eddy Nakamura
79dccdf62b
updating command
2020-08-24 21:58:25 -03:00
Eddy Nakamura
efe1f95c87
updating linter script
2020-08-24 21:46:55 -03:00
Eddy Nakamura
accf805de4
adding files to buildFileList and linter
2020-08-24 21:43:50 -03:00
Eddy Nakamura
24ce47014d
Adding C# lint
2020-08-24 21:40:02 -03:00
Lucas Gravley
e7ff2d0e66
fixed it
2020-08-24 14:22:39 -05:00
Lucas Gravley
a1f76a8e2b
fix version
2020-08-24 14:17:44 -05:00
Lucas Gravley
254db11e08
better... faster... stronger...
2020-08-24 14:12:37 -05:00
Lucas Gravley
3fda83377a
add quotes
2020-08-24 13:56:09 -05:00
Lucas Gravley
6d7c89b7d7
fix struct
2020-08-24 11:16:22 -05:00
Lucas Gravley
bce238d392
adding some spaget
2020-08-24 11:11:10 -05:00
Lucas Gravley
815ff9d520
Adding more
2020-08-20 13:03:40 -05:00
Lucas Gravley
17a4bd2271
adding some dope code
2020-08-20 12:58:11 -05:00
Lucas Gravley
1f2c569c21
adding black
2020-08-20 09:44:11 -05:00
Lucas Gravley
b13ac9a14f
quotes
2020-08-19 14:18:49 -05:00
Lucas Gravley
54abac63b3
fix logic hole
2020-08-19 14:14:41 -05:00
Lukas Gravley
5970f28f6b
Merge pull request #588 from assignUser/chktex
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Add LaTeX support
2020-08-19 13:12:11 -05:00
assignUser
8224e9e6e5
fix exit code
2020-08-19 17:51:07 +00:00
assignUser
dcd81f09d0
fix global config warning
2020-08-19 14:28:41 +00:00
assignUser
bad32e6f53
adress review
2020-08-19 14:16:59 +00:00
assignUser
b42ba5c72a
quiet chktex
2020-08-19 01:11:34 +00:00
assignUser
e8db83e2dd
Update linter.sh
2020-08-19 01:03:12 +02:00
assignUser
e1bc1df9e7
add latex support
2020-08-18 22:54:32 +00:00
Lukas Gravley
308c1fd5aa
Merge pull request #569 from assignUser/master
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Add lintr support to super-lint
2020-08-18 16:08:35 -05:00
assignUser
cc903ad583
Adjust doc about exclusions
2020-08-18 16:11:26 +00:00
Lucas Gravley
f5752cfd45
adding the right var
2020-08-18 10:09:18 -05:00
Lucas Gravley
1f55b422da
fix folder for persistance
2020-08-18 09:51:38 -05:00
assignUser
3d4292f067
alphabetize
2020-08-17 19:47:03 +00:00
assignUser
c2f35fc0b3
Update lib/worker.sh
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Co-authored-by: Lukas Gravley <admiralawkbar@github.com>
2020-08-17 21:45:16 +02:00
assignUser
6372885cd0
relative exclusions work, adressed comments
2020-08-17 16:27:31 +00:00
assignUser
9ec761f61c
prereview
2020-08-17 15:34:55 +00:00
assignUser
727f982bf9
typo
2020-08-17 13:38:00 +00:00
assignUser
4f4784fd41
fix displayed lintr command
2020-08-17 13:30:39 +00:00
assignUser
f9b81243db
add quotes
2020-08-17 12:14:15 +00:00