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133 commits

Author SHA1 Message Date
kpj
75a94966d9 Update snakefmt to 0.2.0 2020-09-22 12:10:58 +02:00
Lucas Gravley
23f3709424 fix version 2020-09-11 14:40:22 -05:00
Lucas Gravley
b9aedb4dee fix lock 2020-09-08 10:07:58 -05:00
Lucas Gravley
20c0ebf419 fix lock 2020-09-08 10:04:29 -05:00
Lukas Gravley
95d153605a
Merge pull request #687 from github/dependabot/npm_and_yarn/dependencies/eslint-plugin-jest-24.0.0 
Bump eslint-plugin-jest from 23.20.0 to 24.0.0 in /dependencies
 2020-09-08 09:24:01 -05:00
Lukas Gravley
9cd5ddc1ea
Merge pull request #688 from github/dependabot/pip/dependencies/yq-2.11.0 
Bump yq from 2.10.1 to 2.11.0 in /dependencies
 2020-09-08 09:23:48 -05:00
kpj
8ac1c99a2e [Snakemake] Support both formatting using 'snakefmt' and linting using 'snakemake --lint' 2020-09-08 09:38:48 +02:00
dependabot[bot]
901645f649
Bump npm-groovy-lint from 7.5.4 to 7.6.1 in /dependencies 
Bumps [npm-groovy-lint](https://github.com/nvuillam/npm-groovy-lint) from 7.5.4 to 7.6.1.
- [Release notes](https://github.com/nvuillam/npm-groovy-lint/releases)
- [Changelog](https://github.com/nvuillam/npm-groovy-lint/blob/master/CHANGELOG.md)
- [Commits](https://github.com/nvuillam/npm-groovy-lint/compare/v7.5.4...v7.6.1)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-08 05:41:33 +00:00
kpj
2d7ba8d26b [Snakemake] Add 'snakefmt' to dependencies 2020-09-07 17:12:44 +02:00
dependabot[bot]
8e85f7e8c0
Bump yq from 2.10.1 to 2.11.0 in /dependencies 
Bumps [yq](https://github.com/kislyuk/yq) from 2.10.1 to 2.11.0.
- [Release notes](https://github.com/kislyuk/yq/releases)
- [Changelog](https://github.com/kislyuk/yq/blob/develop/Changes.rst)
- [Commits](https://github.com/kislyuk/yq/compare/v2.10.1...v2.11.0)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-07 05:24:29 +00:00
dependabot[bot]
f7e6c9c504
Bump eslint-plugin-jest from 23.20.0 to 24.0.0 in /dependencies 
Bumps [eslint-plugin-jest](https://github.com/jest-community/eslint-plugin-jest) from 23.20.0 to 24.0.0.
- [Release notes](https://github.com/jest-community/eslint-plugin-jest/releases)
- [Changelog](https://github.com/jest-community/eslint-plugin-jest/blob/master/CHANGELOG.md)
- [Commits](https://github.com/jest-community/eslint-plugin-jest/compare/v23.20.0...v24.0.0)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-07 05:23:45 +00:00
Lukas Gravley
eb36fb7d7c
Merge branch 'master' into master 2020-09-04 08:53:34 -05:00
NicolasVuillamy
21d75fb89e Groovy traps .nf extension (nextflow) + upgrade npm-groovy-lint 2020-09-04 11:54:31 +02:00
dependabot[bot]
977c6d4647
Bump npm-groovy-lint from 7.5.1 to 7.5.3 in /dependencies 
Bumps [npm-groovy-lint](https://github.com/nvuillam/npm-groovy-lint) from 7.5.1 to 7.5.3.
- [Release notes](https://github.com/nvuillam/npm-groovy-lint/releases)
- [Changelog](https://github.com/nvuillam/npm-groovy-lint/blob/master/CHANGELOG.md)
- [Commits](https://github.com/nvuillam/npm-groovy-lint/compare/v7.5.1...v7.5.3)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-04 05:25:16 +00:00
dependabot[bot]
cc9dac5d8d
Bump cfn-lint from 0.35.0 to 0.35.1 in /dependencies 
Bumps [cfn-lint](https://github.com/aws-cloudformation/cfn-python-lint) from 0.35.0 to 0.35.1.
- [Release notes](https://github.com/aws-cloudformation/cfn-python-lint/releases)
- [Changelog](https://github.com/aws-cloudformation/cfn-python-lint/blob/master/CHANGELOG.md)
- [Commits](https://github.com/aws-cloudformation/cfn-python-lint/compare/v0.35.0...v0.35.1)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-03 05:29:30 +00:00
NicolasVuillamy
824ead0805 Upgrade npm-groovy-lint dependency to 7.5.1 2020-09-02 17:56:37 +02:00
dependabot[bot]
2c5075219f
Bump eslint from 7.8.0 to 7.8.1 in /dependencies 
Bumps [eslint](https://github.com/eslint/eslint) from 7.8.0 to 7.8.1.
- [Release notes](https://github.com/eslint/eslint/releases)
- [Changelog](https://github.com/eslint/eslint/blob/master/CHANGELOG.md)
- [Commits](https://github.com/eslint/eslint/compare/v7.8.0...v7.8.1)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-02 05:45:02 +00:00
Lukas Gravley
7d53a77c11
Merge pull request #651 from github/dependabot/npm_and_yarn/dependencies/eslint-7.8.0 
Bump eslint from 7.7.0 to 7.8.0 in /dependencies
 2020-09-01 08:06:36 -05:00
Lukas Gravley
28804c992e
Merge pull request #652 from github/dependabot/npm_and_yarn/dependencies/typescript-eslint/eslint-plugin-4.0.0 
Bump @typescript-eslint/eslint-plugin from 3.10.1 to 4.0.0 in /dependencies
 2020-09-01 08:06:24 -05:00
dependabot[bot]
fe17392607
Bump stylelint from 13.6.1 to 13.7.0 in /dependencies 
Bumps [stylelint](https://github.com/stylelint/stylelint) from 13.6.1 to 13.7.0.
- [Release notes](https://github.com/stylelint/stylelint/releases)
- [Changelog](https://github.com/stylelint/stylelint/blob/master/CHANGELOG.md)
- [Commits](https://github.com/stylelint/stylelint/compare/13.6.1...13.7.0)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-01 05:50:59 +00:00
dependabot[bot]
3daec71f95
Bump @typescript-eslint/eslint-plugin in /dependencies 
Bumps [@typescript-eslint/eslint-plugin](https://github.com/typescript-eslint/typescript-eslint/tree/HEAD/packages/eslint-plugin) from 3.10.1 to 4.0.0.
- [Release notes](https://github.com/typescript-eslint/typescript-eslint/releases)
- [Changelog](https://github.com/typescript-eslint/typescript-eslint/blob/master/packages/eslint-plugin/CHANGELOG.md)
- [Commits](https://github.com/typescript-eslint/typescript-eslint/commits/v4.0.0/packages/eslint-plugin)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-01 05:49:44 +00:00
dependabot[bot]
d985638061
Bump eslint from 7.7.0 to 7.8.0 in /dependencies 
Bumps [eslint](https://github.com/eslint/eslint) from 7.7.0 to 7.8.0.
- [Release notes](https://github.com/eslint/eslint/releases)
- [Changelog](https://github.com/eslint/eslint/blob/master/CHANGELOG.md)
- [Commits](https://github.com/eslint/eslint/compare/v7.7.0...v7.8.0)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-01 05:46:18 +00:00
dependabot[bot]
51354c005c
Bump npm-groovy-lint from 7.4.2 to 7.4.4 in /dependencies 
Bumps [npm-groovy-lint](https://github.com/nvuillam/npm-groovy-lint) from 7.4.2 to 7.4.4.
- [Release notes](https://github.com/nvuillam/npm-groovy-lint/releases)
- [Changelog](https://github.com/nvuillam/npm-groovy-lint/blob/master/CHANGELOG.md)
- [Commits](https://github.com/nvuillam/npm-groovy-lint/compare/v7.4.2...v7.4.4)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-08-31 05:42:00 +00:00
Lukas Gravley
c632d56548
Merge pull request #632 from cesar-rodriguez/terrascan-v1 
Updates to support Terrascan v1.0.0+
 2020-08-27 08:54:31 -05:00
Lukas Gravley
9286523abf
Merge pull request #633 from github/dependabot/pip/dependencies/black-20.8b1 
Bump black from 19.10b0 to 20.8b1 in /dependencies
 2020-08-27 08:50:28 -05:00
dependabot[bot]
1db115949f
Bump npm-groovy-lint from 7.4.1 to 7.4.2 in /dependencies 
Bumps [npm-groovy-lint](https://github.com/nvuillam/npm-groovy-lint) from 7.4.1 to 7.4.2.
- [Release notes](https://github.com/nvuillam/npm-groovy-lint/releases)
- [Changelog](https://github.com/nvuillam/npm-groovy-lint/blob/master/CHANGELOG.md)
- [Commits](https://github.com/nvuillam/npm-groovy-lint/compare/v7.4.1...v7.4.2)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-08-27 05:49:46 +00:00
dependabot[bot]
bfd18482c2
Bump black from 19.10b0 to 20.8b1 in /dependencies 
Bumps [black](https://github.com/psf/black) from 19.10b0 to 20.8b1.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/master/CHANGES.md)
- [Commits](https://github.com/psf/black/commits)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-08-27 05:49:34 +00:00
Cesar Rodriguez
c4270769a2 removes python version of terrascan 2020-08-26 22:59:58 -04:00
Cesar Rodriguez
68fb056099 removes terrascan python 2020-08-26 22:53:00 -04:00
Lukas Gravley
9dc31425f9
Merge branch 'master' into dependabot/npm_and_yarn/dependencies/stoplight/spectral-5.5.0 2020-08-26 08:21:30 -05:00
Lukas Gravley
e6324445fd
Merge pull request #627 from github/dependabot/npm_and_yarn/dependencies/prettier-2.1.1 
Bump prettier from 2.1.0 to 2.1.1 in /dependencies
 2020-08-26 08:20:45 -05:00
dependabot[bot]
9a6505816e
Bump @typescript-eslint/parser from 3.10.0 to 3.10.1 in /dependencies 
Bumps [@typescript-eslint/parser](https://github.com/typescript-eslint/typescript-eslint/tree/HEAD/packages/parser) from 3.10.0 to 3.10.1.
- [Release notes](https://github.com/typescript-eslint/typescript-eslint/releases)
- [Changelog](https://github.com/typescript-eslint/typescript-eslint/blob/master/packages/parser/CHANGELOG.md)
- [Commits](https://github.com/typescript-eslint/typescript-eslint/commits/v3.10.1/packages/parser)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-08-26 05:49:40 +00:00
dependabot[bot]
0fdeaab200
Bump prettier from 2.1.0 to 2.1.1 in /dependencies 
Bumps [prettier](https://github.com/prettier/prettier) from 2.1.0 to 2.1.1.
- [Release notes](https://github.com/prettier/prettier/releases)
- [Changelog](https://github.com/prettier/prettier/blob/master/CHANGELOG.md)
- [Commits](https://github.com/prettier/prettier/compare/2.1.0...2.1.1)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-08-26 05:49:00 +00:00
dependabot[bot]
5d40454cfd
Bump @stoplight/spectral from 5.4.0 to 5.5.0 in /dependencies 
Bumps [@stoplight/spectral](https://github.com/stoplightio/spectral) from 5.4.0 to 5.5.0.
- [Release notes](https://github.com/stoplightio/spectral/releases)
- [Changelog](https://github.com/stoplightio/spectral/blob/develop/CHANGELOG.md)
- [Commits](https://github.com/stoplightio/spectral/compare/v5.4.0...v5.5.0)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-08-26 05:48:15 +00:00
Lukas Gravley
dcd4945063
Merge branch 'master' into dependabot/npm_and_yarn/dependencies/typescript-eslint/eslint-plugin-3.10.1 2020-08-25 10:03:09 -05:00
dependabot[bot]
6dff1bf616
Bump @typescript-eslint/eslint-plugin in /dependencies 
Bumps [@typescript-eslint/eslint-plugin](https://github.com/typescript-eslint/typescript-eslint/tree/HEAD/packages/eslint-plugin) from 3.9.1 to 3.10.1.
- [Release notes](https://github.com/typescript-eslint/typescript-eslint/releases)
- [Changelog](https://github.com/typescript-eslint/typescript-eslint/blob/master/packages/eslint-plugin/CHANGELOG.md)
- [Commits](https://github.com/typescript-eslint/typescript-eslint/commits/v3.10.1/packages/eslint-plugin)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-08-25 13:48:56 +00:00
Lukas Gravley
e0ad4a726e
Merge branch 'master' into dependabot/npm_and_yarn/dependencies/typescript-eslint/eslint-plugin-3.10.0 2020-08-25 08:47:35 -05:00
Lukas Gravley
b848462c1c
Merge pull request #618 from github/dependabot/npm_and_yarn/dependencies/typescript-eslint/parser-3.10.0 
Bump @typescript-eslint/parser from 3.9.1 to 3.10.0 in /dependencies
 2020-08-25 08:47:01 -05:00
dependabot[bot]
0cac061065
Bump @typescript-eslint/eslint-plugin in /dependencies 
Bumps [@typescript-eslint/eslint-plugin](https://github.com/typescript-eslint/typescript-eslint/tree/HEAD/packages/eslint-plugin) from 3.9.1 to 3.10.0.
- [Release notes](https://github.com/typescript-eslint/typescript-eslint/releases)
- [Changelog](https://github.com/typescript-eslint/typescript-eslint/blob/master/packages/eslint-plugin/CHANGELOG.md)
- [Commits](https://github.com/typescript-eslint/typescript-eslint/commits/v3.10.0/packages/eslint-plugin)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-08-25 05:48:14 +00:00
dependabot[bot]
08eb2459ea
Bump @typescript-eslint/parser from 3.9.1 to 3.10.0 in /dependencies 
Bumps [@typescript-eslint/parser](https://github.com/typescript-eslint/typescript-eslint/tree/HEAD/packages/parser) from 3.9.1 to 3.10.0.
- [Release notes](https://github.com/typescript-eslint/typescript-eslint/releases)
- [Changelog](https://github.com/typescript-eslint/typescript-eslint/blob/master/packages/parser/CHANGELOG.md)
- [Commits](https://github.com/typescript-eslint/typescript-eslint/commits/v3.10.0/packages/parser)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-08-25 05:47:45 +00:00
dependabot[bot]
8da6240458
Bump prettier from 2.0.5 to 2.1.0 in /dependencies 
Bumps [prettier](https://github.com/prettier/prettier) from 2.0.5 to 2.1.0.
- [Release notes](https://github.com/prettier/prettier/releases)
- [Changelog](https://github.com/prettier/prettier/blob/master/CHANGELOG.md)
- [Commits](https://github.com/prettier/prettier/compare/2.0.5...2.1.0)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-08-25 05:47:17 +00:00
Lukas Gravley
6dc22aa3cf
Merge pull request #606 from github/dependabot/npm_and_yarn/dependencies/npm-groovy-lint-7.4.1 
Bump npm-groovy-lint from 7.4.0 to 7.4.1 in /dependencies
 2020-08-24 08:09:36 -05:00
dependabot[bot]
f4f662ff79
Bump pylint from 2.5.3 to 2.6.0 in /dependencies 
Bumps [pylint](https://github.com/PyCQA/pylint) from 2.5.3 to 2.6.0.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Changelog](https://github.com/PyCQA/pylint/blob/master/ChangeLog)
- [Commits](https://github.com/PyCQA/pylint/compare/pylint-2.5.3...pylint-2.6.0)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-08-24 05:51:58 +00:00
dependabot[bot]
0eef8682b8
Bump npm-groovy-lint from 7.4.0 to 7.4.1 in /dependencies 
Bumps [npm-groovy-lint](https://github.com/nvuillam/npm-groovy-lint) from 7.4.0 to 7.4.1.
- [Release notes](https://github.com/nvuillam/npm-groovy-lint/releases)
- [Changelog](https://github.com/nvuillam/npm-groovy-lint/blob/master/CHANGELOG.md)
- [Commits](https://github.com/nvuillam/npm-groovy-lint/compare/v7.4.0...v7.4.1)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-08-24 05:51:36 +00:00
dependabot[bot]
19f5b6150d
Bump typescript from 3.9.7 to 4.0.2 in /dependencies 
Bumps [typescript](https://github.com/Microsoft/TypeScript) from 3.9.7 to 4.0.2.
- [Release notes](https://github.com/Microsoft/TypeScript/releases)
- [Commits](https://github.com/Microsoft/TypeScript/compare/v3.9.7...v4.0.2)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-08-21 05:46:22 +00:00
Lucas Gravley
1f2c569c21 adding black 2020-08-20 09:44:11 -05:00
Lukas Gravley
880efdd8e7
Merge branch 'master' into dependabot/npm_and_yarn/dependencies/typescript-eslint/parser-3.9.1 2020-08-18 08:53:01 -05:00
Lukas Gravley
45834d61cf
Merge pull request #582 from github/dependabot/npm_and_yarn/dependencies/npm-groovy-lint-7.4.0 
Bump npm-groovy-lint from 7.3.1 to 7.4.0 in /dependencies
 2020-08-18 08:52:16 -05:00
dependabot[bot]
0c5b28ce15
Bump @typescript-eslint/eslint-plugin in /dependencies 
Bumps [@typescript-eslint/eslint-plugin](https://github.com/typescript-eslint/typescript-eslint/tree/HEAD/packages/eslint-plugin) from 3.9.0 to 3.9.1.
- [Release notes](https://github.com/typescript-eslint/typescript-eslint/releases)
- [Changelog](https://github.com/typescript-eslint/typescript-eslint/blob/master/packages/eslint-plugin/CHANGELOG.md)
- [Commits](https://github.com/typescript-eslint/typescript-eslint/commits/v3.9.1/packages/eslint-plugin)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-08-18 05:24:36 +00:00
dependabot[bot]
9456cc1c6d
Bump npm-groovy-lint from 7.3.1 to 7.4.0 in /dependencies 
Bumps [npm-groovy-lint](https://github.com/nvuillam/npm-groovy-lint) from 7.3.1 to 7.4.0.
- [Release notes](https://github.com/nvuillam/npm-groovy-lint/releases)
- [Changelog](https://github.com/nvuillam/npm-groovy-lint/blob/master/CHANGELOG.md)
- [Commits](https://github.com/nvuillam/npm-groovy-lint/commits/v7.4.0)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-08-18 05:24:13 +00:00