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238 commits

Author SHA1 Message Date
dependabot[bot]
8c4f89ee26
Bump actions/stale from v3.0.12 to v3.0.13 
Bumps [actions/stale](https://github.com/actions/stale) from v3.0.12 to v3.0.13.
- [Release notes](https://github.com/actions/stale/releases)
- [Commits](https://github.com/actions/stale/compare/v3.0.12...af4072615903a8b031f986d25b1ae3bf45ec44d4)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-11-03 05:45:43 +00:00
Marco Ferrari
fcce194d34 Merge TestCodebase and LintCodebase 
Change-Id: I9a044fefe96e400b8e3320842b53fe97af2a7b40
 2020-10-17 16:12:55 +02:00
Marco Ferrari
ad1a2a5877 Enable debug output during CI 2020-10-15 16:45:18 +02:00
Lukas Gravley
6eaa2a8da0
Merge pull request #828 from dec5e/full-checkout 
Fetch full git history to get a proper list of changed files within super-linter
 2020-10-12 10:19:06 -05:00
dependabot[bot]
76eac0a124
Bump actions/stale from v3.0.11 to v3.0.12 
Bumps [actions/stale](https://github.com/actions/stale) from v3.0.11 to v3.0.12.
- [Release notes](https://github.com/actions/stale/releases)
- [Commits](https://github.com/actions/stale/compare/v3.0.11...44f9eae0adddf72dbf3eedfacc999f70afcec1a8)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-10-12 06:18:42 +00:00
Andrei Artemov
56b32c3704 Fetch full git history to get a proper list of changed files within super-linter 2020-10-09 14:17:56 +03:00
Lucas Gravley
68d629d461 fix pip 2020-10-08 09:14:31 -05:00
Lucas Gravley
08c1113afc fix it 2020-10-08 09:11:26 -05:00
Lucas Gravley
2bec091dbb adding rules 2020-10-08 09:05:32 -05:00
dependabot[bot]
55bdf97202
Bump actions/checkout from v2.3.2 to v2.3.3 
Bumps [actions/checkout](https://github.com/actions/checkout) from v2.3.2 to v2.3.3.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](https://github.com/actions/checkout/compare/v2.3.2...a81bbbf8298c0fa03ea29cdc473d45769f953675)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-24 05:42:06 +00:00
Marco Ferrari
f24f52be11 Lint with Kubeval and fixes 2020-09-22 01:49:01 +02:00
dependabot[bot]
420a7c4b09
Bump actions/stale from v3.0.10 to v3.0.11 
Bumps [actions/stale](https://github.com/actions/stale) from v3.0.10 to v3.0.11.
- [Release notes](https://github.com/actions/stale/releases)
- [Commits](https://github.com/actions/stale/compare/v3.0.10...1849651e2aa1b1d6d2cba4c90c719f4b6c929a28)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-09-14 05:43:25 +00:00
kpj
1e453be7fa [Snakemake] Update codebase 2020-09-07 16:49:07 +02:00
Goryudyuma(Kei.Matsumoto)
a2b751d503
Update pull_request-template.md 2020-09-05 03:32:19 +09:00
Lukas Gravley
fc938bdc0b
Merge pull request #674 from leviem1/use-ghcr 
Move to GitHub Container Registry
 2020-09-04 12:23:35 -05:00
Lucas Gravley
9d2624c0e1 Adding more 2020-09-04 10:54:31 -05:00
Lucas Gravley
cd74d80762 adding some cleanup 2020-09-04 09:52:04 -05:00
Victor Martinez
7380bad950
Validate docker labels in the DEV workflow 2020-09-04 10:26:13 +01:00
Thulio Ferraz Assis
2d259418a7
fix: comment typo for GH Container Registry 2020-09-02 11:11:56 -05:00
Josselin
f34b084586 Add support for black config file 2020-09-02 11:28:57 +02:00
Lucas Gravley
e1c5ac81cf fixed dumb bug 2020-08-24 12:09:00 -05:00
dependabot[bot]
7017c233c9
Bump actions/github-script from v2 to v3 
Bumps [actions/github-script](https://github.com/actions/github-script) from v2 to v3.
- [Release notes](https://github.com/actions/github-script/releases)
- [Commits](https://github.com/actions/github-script/compare/v2...626af12fe9a53dc2972b48385e7fe7dec79145c9)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-08-24 05:47:32 +00:00
Lucas Gravley
a59f74a287 small cleanup 2020-08-20 13:18:17 -05:00
Lucas Gravley
17a4bd2271 adding some dope code 2020-08-20 12:58:11 -05:00
Lukas Gravley
5970f28f6b
Merge pull request #588 from assignUser/chktex 
Add LaTeX support
 2020-08-19 13:12:11 -05:00
assignUser
8224e9e6e5 fix exit code 2020-08-19 17:51:07 +00:00
assignUser
e1bc1df9e7 add latex support 2020-08-18 22:54:32 +00:00
Lukas Gravley
308c1fd5aa
Merge pull request #569 from assignUser/master 
Add lintr support to super-lint
 2020-08-18 16:08:35 -05:00
Lukas Gravley
173294201d
Update CODEOWNERS 2020-08-18 08:51:15 -05:00
Lukas Gravley
931eba8a10
Update CODEOWNERS 2020-08-17 12:42:15 -05:00
Lucas Gravley
2a272a5925 adding more logic 2020-08-17 09:09:05 -05:00
assignUser
0f47f68445 add .lintr detection 2020-08-17 12:01:25 +00:00
assignUser
f6fcfb7922 adjust .lintr 2020-08-16 00:20:06 +00:00
assignUser
d4f4bbd255 everything except linter.sh 2020-08-15 18:21:57 +00:00
dependabot[bot]
02cec94759
Bump actions/stale from v3.0.9 to v3.0.10 
Bumps [actions/stale](https://github.com/actions/stale) from v3.0.9 to v3.0.10.
- [Release notes](https://github.com/actions/stale/releases)
- [Commits](https://github.com/actions/stale/compare/v3.0.9...e976731ae824d9e0165ade8f9e2e8f1743b2fc09)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-08-12 05:30:00 +00:00
Lucas Gravley
fb791083fb fix config 2020-08-11 13:40:38 -05:00
Lucas Gravley
9856082087 add sql goods 2020-08-11 12:30:00 -05:00
Lucas Gravley
c3953b792c adding better logics 2020-08-11 08:09:57 -05:00
Barry
d03cfd78aa Finish sentence 2020-08-11 00:04:35 +01:00
Barry
fe72e27641 Only run deploy to Docker on original repo and not forks 2020-08-10 23:55:52 +01:00
Lukas Gravley
cfb9cf66e3
Merge pull request #546 from github/FixMerge 
Fixing Actions job name
 2020-08-10 12:06:37 -05:00
Lucas Gravley
5e7052202c fix name 2020-08-10 10:44:39 -05:00
dependabot[bot]
6da5e0756a
Bump actions/checkout from v2.3.1 to v2.3.2 
Bumps [actions/checkout](https://github.com/actions/checkout) from v2.3.1 to v2.3.2.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](https://github.com/actions/checkout/compare/v2.3.1...2036a08e25fa78bbd946711a407b529a0a1204bf)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-08-10 05:38:32 +00:00
Lukas Gravley
1746012dab
Merge pull request #534 from marghidanu/master 
PerlCritic basic implementation
 2020-08-07 11:56:09 -05:00
Tudor Marghidanu
523b14a2df PerlCritic basic implementation 2020-08-07 14:58:40 +02:00
Lucas Gravley
4241daf621 fixed bad var 2020-08-06 14:31:58 -05:00
Lucas Gravley
6701372154 so dank 2020-08-06 13:16:23 -05:00
Lucas Gravley
5ffa5518db fixed it real good 2020-08-06 10:56:06 -05:00
Lukas Gravley
4973e1bd1c
Merge pull request #459 from quackduck/quackduck-pr 
Work on adding Java
 2020-08-06 09:25:52 -05:00
Thomas Hughes
59badeabdd
fix xml check, add javadoc 2020-08-05 16:50:12 -05:00