Michael Shimokura
1312a3a3e4
use the .ecrc file
2020-10-08 15:27:47 -04:00
Marco Ferrari
a2b3938ea2
Dynamically load linter rules
2020-10-07 19:02:36 +02:00
Marco Ferrari
68e15659b8
Centralize file list building logic in buildFileList.sh
2020-10-07 16:36:49 +02:00
Marco Ferrari
351496fe72
Populate FILE_ARRAY_DOCKERFILE_HADOLINT
2020-10-03 12:19:33 +02:00
Marco Ferrari
d210896355
Set FILE_ARRAY_EDITORCONFIG
2020-10-03 00:33:01 +02:00
Marco Ferrari
e1b1c7d223
Dynamically initialize FILE_ARRAY variables
2020-10-02 23:02:47 +02:00
Marco Ferrari
973bfdea8e
Initialize all log-related ASAP
2020-09-29 22:46:24 +02:00
Marco Ferrari
9371fab670
Remove unneeded variables and eval the rest
2020-09-29 22:33:11 +02:00
Lukas Gravley
18c32b7dca
Merge pull request #766 from mshimokura/editorconfig_lintall
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Lint all changed files with editorconfig-checker
2020-09-28 08:38:51 -05:00
Lukas Gravley
167af0854e
Merge pull request #767 from kpj/master
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Fix various Snakemake related issues
2020-09-28 08:36:48 -05:00
Lukas Gravley
6482f45462
Merge pull request #769 from ferrarimarco/remove-read-only-change-flag
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Remove READ_ONLY_CHANGE_FLAG flag and fix .editorconfig and shfmt tests
2020-09-28 08:35:58 -05:00
Marco Ferrari
d43fcdc666
Sort environment variables when printing debug info
2020-09-26 00:51:53 +02:00
Marco Ferrari
31fd755fd7
Remove unneeded READ_ONLY_CHANGE_FLAG
2020-09-25 23:41:47 +02:00
Marco Ferrari
63f23368b8
Remove unneeded READ_ONLY_CHANGE_FLAG
2020-09-25 21:25:00 +02:00
kpj
9e7c84fbbb
Fix various Snakemake related variable names
2020-09-24 16:06:12 +02:00
kpj
40f995365b
Fix Snakefile regex
2020-09-24 15:55:47 +02:00
kpj
71ede6ccca
Add missing 'GetLinterRules' calls
2020-09-24 15:54:24 +02:00
Michael Shimokura
12543b369b
Lint all files with editorconfig-checker
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Since .editorconfig configuration files _could_ apply to any file, we
should pass in the RAW_FILE_ARRAY to it. This ensures that files of all
types are linted by editorconfig-checker.
2020-09-24 09:02:24 -04:00
Lukas Gravley
84c79a186b
Merge branch 'master' into master
2020-09-22 08:56:09 -05:00
Marco Ferrari
f24f52be11
Lint with Kubeval and fixes
2020-09-22 01:49:01 +02:00
Lukas Gravley
f290145dfa
Update linter.sh
2020-09-21 13:51:46 -05:00
Lukas Gravley
06cb2ebb6f
Update linter.sh
2020-09-21 13:50:58 -05:00
Marco Ferrari
6168112f61
Fix ERROR_ON_MISSING_EXEC_BIT initialization
2020-09-21 14:43:44 +02:00
kpj
6f6004275f
In anticipation of snakefmt 0.1.6, start using --check and --compact-diff
2020-09-18 16:32:01 +02:00
Marco Ferrari
5cefb9209f
Make bash-exec errors or warnings configurable
2020-09-15 22:40:12 +02:00
NicolasVuillamy
e470df5431
Fix file filters: Reorder arguments to LintCodeBase function
2020-09-15 08:15:53 +02:00
kpj
5b51c2bd92
Use '--compact-diff' instead of '--diff' for snakefmt
2020-09-14 09:36:33 +02:00
Joseph Marino
2698bdfbc3
Fixed a typo in code comments
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Replaced the term "CSS" with "HTML" in code comments for the
HTML_LINTER_RULES variable.
2020-09-11 15:16:55 -04:00
kpj
11f437df4c
Fix usage of FILE_ARRAY_SNAKEMAKE
2020-09-11 13:51:15 +02:00
kpj
e1b2fd6085
Fix bug in Snakemake file regex
2020-09-11 13:49:05 +02:00
kpj
ec0577ae5b
Add Snakemake to language array
2020-09-11 13:31:57 +02:00
Lukas Gravley
79b055babe
Merge pull request #707 from ferrarimarco/fix-node-modules
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Fix list files function typos
2020-09-10 11:21:54 -05:00
Lucas Gravley
b232c5b970
this is the way./..
2020-09-10 10:34:04 -05:00
Lucas Gravley
f432ef2116
fix spaces
2020-09-10 10:25:56 -05:00
Marco Ferrari
ad9c0081f4
Fix list files function typos
2020-09-10 12:10:12 +02:00
NicolasVuillamy
27afc50d60
Set GROOVY Linter failure level to warning
2020-09-10 11:07:05 +02:00
NicolasVuillamy
c86e90b3d0
Solve conflicts + format
2020-09-09 20:22:32 +02:00
NicolasVuillamy
f072bc5c8d
Merge remote-tracking branch 'github/master'
2020-09-09 20:18:21 +02:00
Lukas Gravley
9f3eb7d454
Merge pull request #679 from Goryudyuma/just-filter-the-git-folder
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Just filter the .git folder
2020-09-09 10:53:19 -05:00
Lucas Gravley
b5d42bf181
this makes no sense
2020-09-09 10:37:02 -05:00
Lucas Gravley
880380d118
if i could only read
2020-09-09 10:18:12 -05:00
Lucas Gravley
dbd4cd673d
this has to be right
2020-09-09 10:04:21 -05:00
Lucas Gravley
eb67d9b9c6
fix that dumb action
2020-09-09 09:28:39 -05:00
Lucas Gravley
bae75b456b
more fix
2020-09-09 09:24:57 -05:00
Lucas Gravley
17c3ded695
i forgot how this works
2020-09-09 09:24:27 -05:00
Lukas Gravley
e9811c85d6
Update lib/worker.sh
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yes
Co-authored-by: Goryudyuma(Kei.Matsumoto) <6211370+Goryudyuma@users.noreply.github.com>
2020-09-08 16:00:12 -05:00
Lucas Gravley
fd42f4b3fb
science...
2020-09-08 15:45:17 -05:00
Marco Ferrari
83666ffaba
Fix getting filename for hidden files
2020-09-08 19:20:49 +02:00
Lucas Gravley
0e5f996c3c
look at folders and not file names
2020-09-08 12:16:59 -05:00
Lucas Gravley
a0d4012b67
like this?
2020-09-08 12:01:17 -05:00