662 commits

Author	SHA1	Message	Date
Michael Shimokura	1312a3a3e4	use the .ecrc file	2020-10-08 15:27:47 -04:00
Marco Ferrari	a2b3938ea2	Dynamically load linter rules	2020-10-07 19:02:36 +02:00
Marco Ferrari	68e15659b8	Centralize file list building logic in buildFileList.sh	2020-10-07 16:36:49 +02:00
Marco Ferrari	351496fe72	Populate FILE_ARRAY_DOCKERFILE_HADOLINT	2020-10-03 12:19:33 +02:00
Marco Ferrari	d210896355	Set FILE_ARRAY_EDITORCONFIG	2020-10-03 00:33:01 +02:00
Marco Ferrari	e1b1c7d223	Dynamically initialize FILE_ARRAY variables	2020-10-02 23:02:47 +02:00
Marco Ferrari	973bfdea8e	Initialize all log-related ASAP	2020-09-29 22:46:24 +02:00
Marco Ferrari	9371fab670	Remove unneeded variables and eval the rest	2020-09-29 22:33:11 +02:00
Lukas Gravley	18c32b7dca	Merge pull request #766 from mshimokura/editorconfig_lintall ... Lint all changed files with editorconfig-checker	2020-09-28 08:38:51 -05:00
Lukas Gravley	167af0854e	Merge pull request #767 from kpj/master ... Fix various Snakemake related issues	2020-09-28 08:36:48 -05:00
Lukas Gravley	6482f45462	Merge pull request #769 from ferrarimarco/remove-read-only-change-flag ... Remove READ_ONLY_CHANGE_FLAG flag and fix .editorconfig and shfmt tests	2020-09-28 08:35:58 -05:00
Marco Ferrari	d43fcdc666	Sort environment variables when printing debug info	2020-09-26 00:51:53 +02:00
Marco Ferrari	31fd755fd7	Remove unneeded READ_ONLY_CHANGE_FLAG	2020-09-25 23:41:47 +02:00
Marco Ferrari	63f23368b8	Remove unneeded READ_ONLY_CHANGE_FLAG	2020-09-25 21:25:00 +02:00
kpj	9e7c84fbbb	Fix various Snakemake related variable names	2020-09-24 16:06:12 +02:00
kpj	40f995365b	Fix Snakefile regex	2020-09-24 15:55:47 +02:00
kpj	71ede6ccca	Add missing 'GetLinterRules' calls	2020-09-24 15:54:24 +02:00
Michael Shimokura	12543b369b	Lint all files with editorconfig-checker ... Since .editorconfig configuration files _could_ apply to any file, we should pass in the RAW_FILE_ARRAY to it. This ensures that files of all types are linted by editorconfig-checker.	2020-09-24 09:02:24 -04:00
Lukas Gravley	84c79a186b	Merge branch 'master' into master	2020-09-22 08:56:09 -05:00
Marco Ferrari	f24f52be11	Lint with Kubeval and fixes	2020-09-22 01:49:01 +02:00
Lukas Gravley	f290145dfa	Update linter.sh	2020-09-21 13:51:46 -05:00
Lukas Gravley	06cb2ebb6f	Update linter.sh	2020-09-21 13:50:58 -05:00
Marco Ferrari	6168112f61	Fix ERROR_ON_MISSING_EXEC_BIT initialization	2020-09-21 14:43:44 +02:00
kpj	6f6004275f	In anticipation of snakefmt 0.1.6, start using --check and --compact-diff	2020-09-18 16:32:01 +02:00
Marco Ferrari	5cefb9209f	Make bash-exec errors or warnings configurable	2020-09-15 22:40:12 +02:00
NicolasVuillamy	e470df5431	Fix file filters: Reorder arguments to LintCodeBase function	2020-09-15 08:15:53 +02:00
kpj	5b51c2bd92	Use '--compact-diff' instead of '--diff' for snakefmt	2020-09-14 09:36:33 +02:00
Joseph Marino	2698bdfbc3	Fixed a typo in code comments ... Replaced the term "CSS" with "HTML" in code comments for the HTML_LINTER_RULES variable.	2020-09-11 15:16:55 -04:00
kpj	11f437df4c	Fix usage of FILE_ARRAY_SNAKEMAKE	2020-09-11 13:51:15 +02:00
kpj	e1b2fd6085	Fix bug in Snakemake file regex	2020-09-11 13:49:05 +02:00
kpj	ec0577ae5b	Add Snakemake to language array	2020-09-11 13:31:57 +02:00
Lukas Gravley	79b055babe	Merge pull request #707 from ferrarimarco/fix-node-modules ... Fix list files function typos	2020-09-10 11:21:54 -05:00
Lucas Gravley	b232c5b970	this is the way./..	2020-09-10 10:34:04 -05:00
Lucas Gravley	f432ef2116	fix spaces	2020-09-10 10:25:56 -05:00
Marco Ferrari	ad9c0081f4	Fix list files function typos	2020-09-10 12:10:12 +02:00
NicolasVuillamy	27afc50d60	Set GROOVY Linter failure level to warning	2020-09-10 11:07:05 +02:00
NicolasVuillamy	c86e90b3d0	Solve conflicts + format	2020-09-09 20:22:32 +02:00
NicolasVuillamy	f072bc5c8d	Merge remote-tracking branch 'github/master'	2020-09-09 20:18:21 +02:00
Lukas Gravley	9f3eb7d454	Merge pull request #679 from Goryudyuma/just-filter-the-git-folder ... Just filter the .git folder	2020-09-09 10:53:19 -05:00
Lucas Gravley	b5d42bf181	this makes no sense	2020-09-09 10:37:02 -05:00
Lucas Gravley	880380d118	if i could only read	2020-09-09 10:18:12 -05:00
Lucas Gravley	dbd4cd673d	this has to be right	2020-09-09 10:04:21 -05:00
Lucas Gravley	eb67d9b9c6	fix that dumb action	2020-09-09 09:28:39 -05:00
Lucas Gravley	bae75b456b	more fix	2020-09-09 09:24:57 -05:00
Lucas Gravley	17c3ded695	i forgot how this works	2020-09-09 09:24:27 -05:00
Lukas Gravley	e9811c85d6	Update lib/worker.sh ... yes Co-authored-by: Goryudyuma(Kei.Matsumoto) <6211370+Goryudyuma@users.noreply.github.com>	2020-09-08 16:00:12 -05:00
Lucas Gravley	fd42f4b3fb	science...	2020-09-08 15:45:17 -05:00
Marco Ferrari	83666ffaba	Fix getting filename for hidden files	2020-09-08 19:20:49 +02:00
Lucas Gravley	0e5f996c3c	look at folders and not file names	2020-09-08 12:16:59 -05:00
Lucas Gravley	a0d4012b67	like this?	2020-09-08 12:01:17 -05:00