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161 commits

Author SHA1 Message Date
dependabot[bot]
3ecc0801ea
Bump snakemake from 7.30.1 to 7.32.4 in /dependencies/python (#4815)
Bumps [snakemake](https://github.com/snakemake/snakemake) from 7.30.1 to 7.32.4.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](https://github.com/snakemake/snakemake/compare/v7.30.1...v7.32.4)

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2023-10-31 20:55:34 +00:00
dependabot[bot]
70b7be6dab
Bump pylint from 2.17.4 to 3.0.2 in /dependencies/python (#4817)
Bumps [pylint](https://github.com/pylint-dev/pylint) from 2.17.4 to 3.0.2.
- [Release notes](https://github.com/pylint-dev/pylint/releases)
- [Commits](https://github.com/pylint-dev/pylint/compare/v2.17.4...v3.0.2)

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2023-10-31 18:43:32 +00:00
dependabot[bot]
25245e240f
Bump yq from 3.2.2 to 3.2.3 in /dependencies/python (#4818)
Bumps [yq](https://github.com/kislyuk/yq) from 3.2.2 to 3.2.3.
- [Release notes](https://github.com/kislyuk/yq/releases)
- [Changelog](https://github.com/kislyuk/yq/blob/develop/Changes.rst)
- [Commits](https://github.com/kislyuk/yq/compare/v3.2.2...v3.2.3)

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2023-10-31 18:37:36 +00:00
dependabot[bot]
e7bfeab898
Bump cfn-lint from 0.80.3 to 0.83.0 in /dependencies/python (#4813)
Bumps [cfn-lint](https://github.com/aws-cloudformation/cfn-python-lint) from 0.80.3 to 0.83.0.
- [Release notes](https://github.com/aws-cloudformation/cfn-python-lint/releases)
- [Changelog](https://github.com/aws-cloudformation/cfn-lint/blob/main/CHANGELOG.md)
- [Commits](https://github.com/aws-cloudformation/cfn-python-lint/compare/v0.80.3...v0.83.0)

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2023-10-31 18:37:11 +00:00
dependabot[bot]
4520999b50
Bump mypy from 1.5.1 to 1.6.1 in /dependencies/python (#4812)
Bumps [mypy](https://github.com/python/mypy) from 1.5.1 to 1.6.1.
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](https://github.com/python/mypy/compare/v1.5.1...v1.6.1)

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2023-10-31 18:36:25 +00:00
dependabot[bot]
86191d8f68
Bump black from 23.3.0 to 23.10.1 in /dependencies/python (#4811)
Bumps [black](https://github.com/psf/black) from 23.3.0 to 23.10.1.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/23.3.0...23.10.1)

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2023-10-31 18:35:53 +00:00
dependabot[bot]
859dcc6eab
Bump ansible-lint from 6.16.2 to 6.21.1 in /dependencies/python (#4819)
Bumps [ansible-lint](https://github.com/ansible/ansible-lint) from 6.16.2 to 6.21.1.
- [Release notes](https://github.com/ansible/ansible-lint/releases)
- [Commits](https://github.com/ansible/ansible-lint/compare/v6.16.2...v6.21.1)

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2023-10-31 17:41:27 +00:00
dependabot[bot]
a1be060607
Bump snakefmt from 0.8.4 to 0.8.5 in /dependencies/python (#4820)
Bumps [snakefmt](https://github.com/snakemake/snakefmt) from 0.8.4 to 0.8.5.
- [Release notes](https://github.com/snakemake/snakefmt/releases)
- [Changelog](https://github.com/snakemake/snakefmt/blob/master/CHANGELOG.md)
- [Commits](https://github.com/snakemake/snakefmt/compare/v0.8.4...v0.8.5)

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2023-10-31 17:35:55 +00:00
Marco Ferrari
9ee2eed763
Simplify pip requirements files (#4796) 2023-10-27 23:07:51 +00:00
dependabot[bot]
67d756cf51
Bump pathspec from 0.11.1 to 0.11.2 in /dependencies/python (#4706)
Bumps [pathspec](https://github.com/cpburnz/python-pathspec) from 0.11.1 to 0.11.2.
- [Release notes](https://github.com/cpburnz/python-pathspec/releases)
- [Changelog](https://github.com/cpburnz/python-pathspec/blob/master/CHANGES.rst)
- [Commits](https://github.com/cpburnz/python-pathspec/compare/v0.11.1...v0.11.2)

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2023-10-27 00:24:30 +00:00
dependabot[bot]
44c739fe15
Bump docutils from 0.19 to 0.20.1 in /dependencies/python (#4785)
Bumps [docutils](https://docutils.sourceforge.io/) from 0.19 to 0.20.1.

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2023-10-24 23:50:46 +00:00
dependabot[bot]
b0d1acee1f
Bump packaging from 23.1 to 23.2 in /dependencies/python (#4743)
Bumps [packaging](https://github.com/pypa/packaging) from 23.1 to 23.2.
- [Release notes](https://github.com/pypa/packaging/releases)
- [Changelog](https://github.com/pypa/packaging/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pypa/packaging/compare/23.1...23.2)

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2023-10-17 16:17:31 +00:00
dependabot[bot]
a548a7878b
Bump bracex from 2.3.post1 to 2.4 in /dependencies/python (#4729)
Bumps [bracex](https://github.com/facelessuser/bracex) from 2.3.post1 to 2.4.
- [Release notes](https://github.com/facelessuser/bracex/releases)
- [Commits](https://github.com/facelessuser/bracex/compare/2.3.post1...2.4)

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2023-10-15 04:28:55 +00:00
dependabot[bot]
0beefd131f
Bump mypy from 1.5.0 to 1.5.1 in /dependencies/python (#4688)
Bumps [mypy](https://github.com/python/mypy) from 1.5.0 to 1.5.1.
- [Commits](https://github.com/python/mypy/compare/v1.5.0...v1.5.1)

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2023-10-06 22:02:50 +00:00
dependabot[bot]
3213b9ea99
Bump wcmatch from 8.4.1 to 8.5 in /dependencies/python (#4707)
Bumps [wcmatch](https://github.com/facelessuser/wcmatch) from 8.4.1 to 8.5.
- [Release notes](https://github.com/facelessuser/wcmatch/releases)
- [Commits](https://github.com/facelessuser/wcmatch/compare/8.4.1...8.5)

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2023-10-06 22:00:49 +00:00
dependabot[bot]
5edfcf7532
Bump jsonpickle from 3.0.1 to 3.0.2 in /dependencies/python (#4687)
Bumps [jsonpickle](https://github.com/jsonpickle/jsonpickle) from 3.0.1 to 3.0.2.
- [Changelog](https://github.com/jsonpickle/jsonpickle/blob/main/CHANGES.rst)
- [Commits](https://github.com/jsonpickle/jsonpickle/compare/v3.0.1...v3.0.2)

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2023-09-30 15:13:02 +00:00
dependabot[bot]
64b3bba02c
Bump cfn-lint from 0.77.5 to 0.80.3 in /dependencies/python (#4690)
Bumps [cfn-lint](https://github.com/aws-cloudformation/cfn-python-lint) from 0.77.5 to 0.80.3.
- [Release notes](https://github.com/aws-cloudformation/cfn-python-lint/releases)
- [Changelog](https://github.com/aws-cloudformation/cfn-lint/blob/main/CHANGELOG.md)
- [Commits](https://github.com/aws-cloudformation/cfn-python-lint/compare/v0.77.5...v0.80.3)

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2023-09-29 20:19:55 +00:00
dependabot[bot]
397b14da44
Bump jupyter-core from 5.3.0 to 5.3.1 in /dependencies/python (#4658)
Bumps [jupyter-core](https://github.com/jupyter/jupyter_core) from 5.3.0 to 5.3.1.
- [Release notes](https://github.com/jupyter/jupyter_core/releases)
- [Changelog](https://github.com/jupyter/jupyter_core/blob/main/CHANGELOG.md)
- [Commits](https://github.com/jupyter/jupyter_core/compare/v5.3.0...v5.3.1)

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2023-09-21 06:56:59 +00:00
dependabot[bot]
4eadc5800b
Bump configargparse from 1.5.3 to 1.7 in /dependencies/python (#4659)
Bumps [configargparse](https://github.com/bw2/ConfigArgParse) from 1.5.3 to 1.7.
- [Release notes](https://github.com/bw2/ConfigArgParse/releases)
- [Commits](https://github.com/bw2/ConfigArgParse/compare/v1.5.3...1.7)

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2023-09-18 19:04:00 +00:00
dependabot[bot]
9e435d7fd2
Bump jsonpointer from 2.3 to 2.4 in /dependencies/python (#4605)
Bumps [jsonpointer](https://github.com/stefankoegl/python-json-pointer) from 2.3 to 2.4.
- [Commits](https://github.com/stefankoegl/python-json-pointer/compare/v2.3...v2.4)

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2023-09-14 21:39:54 +00:00
dependabot[bot]
c51d3ee039
Bump argcomplete from 3.0.8 to 3.1.1 in /dependencies/python (#4609)
Bumps [argcomplete](https://github.com/kislyuk/argcomplete) from 3.0.8 to 3.1.1.
- [Release notes](https://github.com/kislyuk/argcomplete/releases)
- [Changelog](https://github.com/kislyuk/argcomplete/blob/develop/Changes.rst)
- [Commits](https://github.com/kislyuk/argcomplete/compare/v3.0.8...v3.1.1)

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2023-09-11 22:44:15 +00:00
dependabot[bot]
af9a6d1c15
Bump resolvelib from 0.8.1 to 1.0.1 in /dependencies/python (#4581)
Bumps [resolvelib](https://github.com/sarugaku/resolvelib) from 0.8.1 to 1.0.1.
- [Changelog](https://github.com/sarugaku/resolvelib/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/sarugaku/resolvelib/compare/0.8.1...1.0.1)

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2023-08-25 18:24:07 +00:00
dependabot[bot]
0a20296d93
Bump aws-sam-translator from 1.65.0 to 1.73.0 in /dependencies/python (#4582)
Bumps [aws-sam-translator](https://github.com/awslabs/serverless-application-model) from 1.65.0 to 1.73.0.
- [Release notes](https://github.com/awslabs/serverless-application-model/releases)
- [Commits](https://github.com/awslabs/serverless-application-model/compare/v1.65.0...v1.73.0)

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2023-08-22 15:37:51 +00:00
dependabot[bot]
a6cc955aed
Bump charset-normalizer from 3.1.0 to 3.2.0 in /dependencies/python (#4583)
Bumps [charset-normalizer](https://github.com/Ousret/charset_normalizer) from 3.1.0 to 3.2.0.
- [Release notes](https://github.com/Ousret/charset_normalizer/releases)
- [Changelog](https://github.com/Ousret/charset_normalizer/blob/master/CHANGELOG.md)
- [Commits](https://github.com/Ousret/charset_normalizer/compare/3.1.0...3.2.0)

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2023-08-22 15:37:03 +00:00
dependabot[bot]
92d2b547c0
Bump dill from 0.3.6 to 0.3.7 in /dependencies/python (#4584)
Bumps [dill](https://github.com/uqfoundation/dill) from 0.3.6 to 0.3.7.
- [Release notes](https://github.com/uqfoundation/dill/releases)
- [Commits](https://github.com/uqfoundation/dill/compare/dill-0.3.6...dill-0.3.7)

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2023-08-22 15:36:21 +00:00
dependabot[bot]
1ed961c10c
Bump pytest from 7.3.1 to 7.4.0 in /dependencies/python (#4585)
Bumps [pytest](https://github.com/pytest-dev/pytest) from 7.3.1 to 7.4.0.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/7.3.1...7.4.0)

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2023-08-22 15:35:38 +00:00
dependabot[bot]
24891bf279
Bump fastjsonschema from 2.16.3 to 2.18.0 in /dependencies/python (#4509)
Bumps [fastjsonschema](https://github.com/horejsek/python-fastjsonschema) from 2.16.3 to 2.18.0.
- [Changelog](https://github.com/horejsek/python-fastjsonschema/blob/master/CHANGELOG.txt)
- [Commits](https://github.com/horejsek/python-fastjsonschema/compare/v2.16.3...v2.18.0)

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2023-08-17 15:03:13 +00:00
dependabot[bot]
38acc98590
Bump jsonschema from 4.17.3 to 4.19.0 in /dependencies/python (#4530)
Bumps [jsonschema](https://github.com/python-jsonschema/jsonschema) from 4.17.3 to 4.19.0.
- [Release notes](https://github.com/python-jsonschema/jsonschema/releases)
- [Changelog](https://github.com/python-jsonschema/jsonschema/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/python-jsonschema/jsonschema/compare/v4.17.3...v4.19.0)

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2023-08-16 18:07:51 +00:00
dependabot[bot]
95ce0ca11d
Bump typing-extensions from 4.7.0 to 4.7.1 in /dependencies/python (#4556)
Bumps [typing-extensions](https://github.com/python/typing_extensions) from 4.7.0 to 4.7.1.
- [Release notes](https://github.com/python/typing_extensions/releases)
- [Changelog](https://github.com/python/typing_extensions/blob/main/CHANGELOG.md)
- [Commits](https://github.com/python/typing_extensions/compare/4.7.0...4.7.1)

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2023-08-16 18:05:11 +00:00
dependabot[bot]
92e2609a7c
Bump ruamel-yaml from 0.17.21 to 0.17.32 in /dependencies/python (#4557)
Bumps [ruamel-yaml](https://sourceforge.net/p/ruamel-yaml/code/ci/default/tree) from 0.17.21 to 0.17.32.

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2023-08-16 18:04:52 +00:00
dependabot[bot]
f225eefb55
Bump diff-cover from 7.5.0 to 7.7.0 in /dependencies/python (#4488)
Bumps [diff-cover](https://github.com/Bachmann1234/diff-cover) from 7.5.0 to 7.7.0.
- [Release notes](https://github.com/Bachmann1234/diff-cover/releases)
- [Changelog](https://github.com/Bachmann1234/diff_cover/blob/main/CHANGELOG)
- [Commits](https://github.com/Bachmann1234/diff-cover/compare/v7.5.0...v7.7.0)

---
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2023-08-15 10:31:20 -07:00
dependabot[bot]
71aab24036
Bump mypy from 1.4.1 to 1.5.0 in /dependencies/python (#4554)
Bumps [mypy](https://github.com/python/mypy) from 1.4.1 to 1.5.0.
- [Commits](https://github.com/python/mypy/compare/v1.4.1...v1.5.0)

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2023-08-15 10:28:20 -07:00
dependabot[bot]
5e329f4d04
Bump rich from 13.3.5 to 13.5.2 in /dependencies/python (#4532)
Bumps [rich](https://github.com/Textualize/rich) from 13.3.5 to 13.5.2.
- [Release notes](https://github.com/Textualize/rich/releases)
- [Changelog](https://github.com/Textualize/rich/blob/master/CHANGELOG.md)
- [Commits](https://github.com/Textualize/rich/compare/v13.3.5...v13.5.2)

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2023-08-11 21:12:11 +00:00
dependabot[bot]
287003a823
Bump dpath from 2.1.5 to 2.1.6 in /dependencies/python (#4336)
Bumps [dpath](https://github.com/dpath-maintainers/dpath-python) from 2.1.5 to 2.1.6.
- [Release notes](https://github.com/dpath-maintainers/dpath-python/releases)
- [Commits](https://github.com/dpath-maintainers/dpath-python/compare/v2.1.5...v2.1.6)

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2023-08-10 22:20:01 +00:00
dependabot[bot]
63639e5c57
Bump cryptography from 40.0.2 to 41.0.3 in /dependencies/python (#4533)
Bumps [cryptography](https://github.com/pyca/cryptography) from 40.0.2 to 41.0.3.
- [Changelog](https://github.com/pyca/cryptography/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pyca/cryptography/compare/40.0.2...41.0.3)

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2023-08-10 05:36:08 +00:00
dependabot[bot]
1d0a3be314
Bump requests from 2.28.2 to 2.31.0 in /dependencies/python (#4343) 2023-07-23 08:48:14 -07:00
Philip Mallegol-Hansen
ddb1589d62
Bumps PyYAML to 6.0.1 (#4497)
There's some conflict where PyYAML 6.0.0 and Cython 3.0 do not play well together, this version fixes that.
2023-07-21 15:04:44 -07:00
dependabot[bot]
a0b6172529
Bump mypy from 1.2.0 to 1.4.1 in /dependencies/python (#4463)
Bumps [mypy](https://github.com/python/mypy) from 1.2.0 to 1.4.1.
- [Commits](https://github.com/python/mypy/compare/v1.2.0...v1.4.1)

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2023-07-10 11:38:05 -07:00
dependabot[bot]
d94108a1cb
Bump jsonpatch from 1.32 to 1.33 in /dependencies/python (#4461)
Bumps [jsonpatch](https://github.com/stefankoegl/python-json-patch) from 1.32 to 1.33.
- [Commits](https://github.com/stefankoegl/python-json-patch/compare/v1.32...v1.33)

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2023-07-10 15:37:54 +00:00
dependabot[bot]
5a2b7f716e
Bump tomlkit from 0.11.7 to 0.11.8 in /dependencies/python (#4462)
Bumps [tomlkit](https://github.com/sdispater/tomlkit) from 0.11.7 to 0.11.8.
- [Release notes](https://github.com/sdispater/tomlkit/releases)
- [Changelog](https://github.com/sdispater/tomlkit/blob/master/CHANGELOG.md)
- [Commits](https://github.com/sdispater/tomlkit/compare/0.11.7...0.11.8)

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2023-07-10 08:13:25 -07:00
dependabot[bot]
27da2f7740
Bump astroid from 2.15.4 to 2.15.6 in /dependencies/python (#4454)
Bumps [astroid](https://github.com/PyCQA/astroid) from 2.15.4 to 2.15.6.
- [Release notes](https://github.com/PyCQA/astroid/releases)
- [Changelog](https://github.com/pylint-dev/astroid/blob/main/ChangeLog)
- [Commits](https://github.com/PyCQA/astroid/compare/v2.15.4...v2.15.6)

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2023-07-10 05:29:02 +00:00
dependabot[bot]
83ab4f9ebe
Bump filelock from 3.12.0 to 3.12.2 in /dependencies/python (#4431)
Bumps [filelock](https://github.com/tox-dev/py-filelock) from 3.12.0 to 3.12.2.
- [Release notes](https://github.com/tox-dev/py-filelock/releases)
- [Changelog](https://github.com/tox-dev/py-filelock/blob/main/docs/changelog.rst)
- [Commits](https://github.com/tox-dev/py-filelock/compare/3.12.0...3.12.2)

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2023-07-09 08:20:54 -07:00
dependabot[bot]
dd214f1e8d
Bump exceptiongroup from 1.1.1 to 1.1.2 in /dependencies/python (#4433)
Bumps [exceptiongroup](https://github.com/agronholm/exceptiongroup) from 1.1.1 to 1.1.2.
- [Changelog](https://github.com/agronholm/exceptiongroup/blob/main/CHANGES.rst)
- [Commits](https://github.com/agronholm/exceptiongroup/compare/1.1.1...1.1.2)

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2023-07-09 02:18:21 +00:00
dependabot[bot]
e4b28a6aff
Bump boto3 from 1.26.138 to 1.28.1 in /dependencies/python (#4452)
* Bump boto3 from 1.26.138 to 1.28.1 in /dependencies/python

Bumps [boto3](https://github.com/boto/boto3) from 1.26.138 to 1.28.1.
- [Release notes](https://github.com/boto/boto3/releases)
- [Changelog](https://github.com/boto/boto3/blob/develop/CHANGELOG.rst)
- [Commits](https://github.com/boto/boto3/compare/1.26.138...1.28.1)

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* Updates botocore to match new boto3 version

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2023-07-08 18:55:53 -07:00
dependabot[bot]
22728526b2
Bump sqlfluff from 2.1.0 to 2.1.2 in /dependencies/python (#4434)
Bumps [sqlfluff](https://github.com/sqlfluff/sqlfluff) from 2.1.0 to 2.1.2.
- [Release notes](https://github.com/sqlfluff/sqlfluff/releases)
- [Changelog](https://github.com/sqlfluff/sqlfluff/blob/main/CHANGELOG.md)
- [Commits](https://github.com/sqlfluff/sqlfluff/compare/2.1.0...2.1.2)

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2023-07-08 04:07:03 +00:00
dependabot[bot]
d428480827
Bump snakemake from 7.28.3 to 7.30.1 in /dependencies/python (#4411)
Bumps [snakemake](https://github.com/snakemake/snakemake) from 7.28.3 to 7.30.1.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](https://github.com/snakemake/snakemake/compare/v7.28.3...v7.30.1)

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2023-06-30 00:30:42 +00:00
dependabot[bot]
b9bcc9ae58
Bump typing-extensions from 4.5.0 to 4.7.0 in /dependencies/python (#4412)
Bumps [typing-extensions](https://github.com/python/typing_extensions) from 4.5.0 to 4.7.0.
- [Release notes](https://github.com/python/typing_extensions/releases)
- [Changelog](https://github.com/python/typing_extensions/blob/main/CHANGELOG.md)
- [Commits](https://github.com/python/typing_extensions/compare/4.5.0...4.7.0)

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2023-06-29 11:12:54 -07:00
dependabot[bot]
c7e082d5c0
Bump regex from 2023.3.23 to 2023.6.3 in /dependencies/python (#4401)
Bumps [regex](https://github.com/mrabarnett/mrab-regex) from 2023.3.23 to 2023.6.3.
- [Changelog](https://github.com/mrabarnett/mrab-regex/blob/hg/changelog.txt)
- [Commits](https://github.com/mrabarnett/mrab-regex/compare/2023.3.23...2023.6.3)

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2023-06-28 14:01:50 -07:00
dependabot[bot]
882b30d6f2
Bump pydantic from 1.10.7 to 1.10.9 in /dependencies/python (#4370)
Bumps [pydantic](https://github.com/pydantic/pydantic) from 1.10.7 to 1.10.9.
- [Release notes](https://github.com/pydantic/pydantic/releases)
- [Changelog](https://github.com/pydantic/pydantic/blob/main/HISTORY.md)
- [Commits](https://github.com/pydantic/pydantic/compare/v1.10.7...v1.10.9)

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2023-06-20 20:58:24 +00:00
dependabot[bot]
089c732c47
Bump snakemake from 7.25.0 to 7.28.3 in /dependencies/python (#4390)
Bumps [snakemake](https://github.com/snakemake/snakemake) from 7.25.0 to 7.28.3.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](https://github.com/snakemake/snakemake/compare/v7.25.0...v7.28.3)

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2023-06-19 08:24:30 -07:00