Commit graph

184 commits

Author SHA1 Message Date
Marco Ferrari
5cefb9209f Make bash-exec errors or warnings configurable 2020-09-15 22:40:12 +02:00
NicolasVuillamy
e470df5431 Fix file filters: Reorder arguments to LintCodeBase function 2020-09-15 08:15:53 +02:00
Lukas Gravley
79b055babe
Merge pull request #707 from ferrarimarco/fix-node-modules
Fix list files function typos
2020-09-10 11:21:54 -05:00
Lucas Gravley
b232c5b970 this is the way./.. 2020-09-10 10:34:04 -05:00
Marco Ferrari
ad9c0081f4 Fix list files function typos 2020-09-10 12:10:12 +02:00
NicolasVuillamy
27afc50d60 Set GROOVY Linter failure level to warning 2020-09-10 11:07:05 +02:00
NicolasVuillamy
f072bc5c8d Merge remote-tracking branch 'github/master' 2020-09-09 20:18:21 +02:00
Lucas Gravley
b5d42bf181 this makes no sense 2020-09-09 10:37:02 -05:00
Lucas Gravley
880380d118 if i could only read 2020-09-09 10:18:12 -05:00
Lucas Gravley
dbd4cd673d this has to be right 2020-09-09 10:04:21 -05:00
Lucas Gravley
eb67d9b9c6 fix that dumb action 2020-09-09 09:28:39 -05:00
Lucas Gravley
bae75b456b more fix 2020-09-09 09:24:57 -05:00
Lucas Gravley
17c3ded695 i forgot how this works 2020-09-09 09:24:27 -05:00
Lukas Gravley
e9811c85d6
Update lib/worker.sh
yes

Co-authored-by: Goryudyuma(Kei.Matsumoto) <6211370+Goryudyuma@users.noreply.github.com>
2020-09-08 16:00:12 -05:00
Lucas Gravley
fd42f4b3fb science... 2020-09-08 15:45:17 -05:00
Lucas Gravley
0e5f996c3c look at folders and not file names 2020-09-08 12:16:59 -05:00
Lucas Gravley
a0d4012b67 like this? 2020-09-08 12:01:17 -05:00
Lucas Gravley
53995952e0 Merge branch 'master' into just-filter-the-git-folder 2020-09-08 10:43:59 -05:00
kpj
581f07a32b [Snakemake] Fix 'LINTER_NAME' 2020-09-08 10:19:56 +02:00
kpj
8ac1c99a2e [Snakemake] Support both formatting using 'snakefmt' and linting using 'snakemake --lint' 2020-09-08 09:38:48 +02:00
kpj
53f551c8b0 [Snakemake] Add '--config' parameter to 'snakefmt' calls 2020-09-07 17:26:58 +02:00
kpj
0c5029bf67 [Snakemake] Actually run 'snakefmt' tests 2020-09-07 17:20:56 +02:00
NicolasVuillamy
04c93b4ff5 Add management of FILTER_REGEX_INCLUDE and FILTER_REGEX_EXCLUDE options 2020-09-05 12:25:44 +02:00
Lukas Gravley
828de134a9
this should be right 2020-09-04 13:22:01 -05:00
Goryudyuma(Kei.Matsumoto)
b31b696e00
Just filter the .git folder 2020-09-05 03:08:26 +09:00
NicolasVuillamy
21d75fb89e Groovy traps .nf extension (nextflow) + upgrade npm-groovy-lint 2020-09-04 11:54:31 +02:00
Lukas Gravley
b012d72952
Merge pull request #662 from montyly/dev-black-config-file
Add support for black config file
2020-09-02 09:57:44 -05:00
Lucas Gravley
a756e40157 typo 2020-09-02 09:07:39 -05:00
Lucas Gravley
6040030c8a Adding more paths to ignore 2020-09-02 09:05:36 -05:00
Josselin
f34b084586 Add support for black config file 2020-09-02 11:28:57 +02:00
Marco Ferrari
30763f2575 Streamline shell file list building 2020-08-31 23:47:48 +02:00
Lucas Gravley
98c2eec42a small clean 2020-08-31 14:34:14 -05:00
Marco Ferrari
228a86e5c0 Remove duplicate output lines when checking for ZSH scripts 2020-08-31 19:56:49 +02:00
Marco Ferrari
798311822a Add file path to ZSH warning messages 2020-08-31 19:47:05 +02:00
Marco Ferrari
833dcb8bd8 Don't check zsh files with shfmt 2020-08-31 19:31:22 +02:00
Marco Ferrari
644e69131b Fix shfmt test 2020-08-31 19:22:50 +02:00
Marco Ferrari
0d849cd5e0 Lint shell files with shfmt 2020-08-31 19:22:49 +02:00
Lucas Gravley
13e87dd021 lots of cleanup 2020-08-31 11:51:03 -05:00
Lucas Gravley
958f70fe67 its real picky 2020-08-31 10:11:12 -05:00
Lucas Gravley
a32d0c1314 here 2020-08-28 14:08:08 -05:00
Lucas Gravley
a9bc2068f7 they come in pairs 2020-08-28 13:50:23 -05:00
Lucas Gravley
633418aa8a fix var 2020-08-28 13:47:15 -05:00
Lucas Gravley
e9c3938982 fix tty issues 2020-08-28 13:44:11 -05:00
Lucas Gravley
9be83e0166 merge master 2020-08-28 11:46:11 -05:00
Lucas Gravley
345a6626e7 put it back 2020-08-28 11:42:14 -05:00
Lucas Gravley
a35df1c943 its friday 2020-08-28 10:15:44 -05:00
Lucas Gravley
40fddbad79 get name even 2020-08-28 10:12:02 -05:00
Lucas Gravley
920f7b673b adding warning 2020-08-28 10:08:21 -05:00
Lucas Gravley
0404c39203 adding exec 2020-08-28 09:56:53 -05:00
Cesar Rodriguez
815f8236dd Updates scan command for Terrascan 2020-08-26 22:53:00 -04:00