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Author SHA1 Message Date
Marco Ferrari
1f2fbb14cd
build: install lintr in a dedicated stage (#5247) 2024-02-09 17:44:49 +00:00
Marco Ferrari
a26db6d34d
feat: lint xsd files (#5250) 
Lint XSD files with xmllint

Close #5248
 2024-02-09 17:44:30 +00:00
Marco Ferrari
fe6e29b685
feat: automatically set the default branch (#5242) 
Get the default branch from the GitHub Actions event payload when
running on GitHub Actions. Default to 'master', as before, otherwise.
 2024-02-08 08:41:07 +00:00
Marco Ferrari
38edbe557a
fix: create mypy cache directory (#5240) 
MyPy expects the cache directory to be there. We now remove it after
each super-linter run to avoid leftovers, so we need to create it before
running MyPy.

See https://github.com/python/mypy/issues/10768
and https://github.com/python/mypy/issues/10863
 2024-02-06 15:53:30 +01:00
dependabot[bot]
1bd6c0d35d
deps(npm): bump react-router-dom from 6.21.3 to 6.22.0 in /dependencies (#5225) 
Bumps [react-router-dom](https://github.com/remix-run/react-router/tree/HEAD/packages/react-router-dom) from 6.21.3 to 6.22.0.
- [Release notes](https://github.com/remix-run/react-router/releases)
- [Changelog](https://github.com/remix-run/react-router/blob/main/packages/react-router-dom/CHANGELOG.md)
- [Commits](https://github.com/remix-run/react-router/commits/react-router-dom@6.22.0/packages/react-router-dom)

---
updated-dependencies:
- dependency-name: react-router-dom
  dependency-type: direct:production
  update-type: version-update:semver-minor
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 2024-02-05 21:07:47 +00:00
dependabot[bot]
3b12f82c30
deps(npm): bump @babel/eslint-parser in /dependencies (#5226) 
Bumps [@babel/eslint-parser](https://github.com/babel/babel/tree/HEAD/eslint/babel-eslint-parser) from 7.23.9 to 7.23.10.
- [Release notes](https://github.com/babel/babel/releases)
- [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md)
- [Commits](https://github.com/babel/babel/commits/v7.23.10/eslint/babel-eslint-parser)

---
updated-dependencies:
- dependency-name: "@babel/eslint-parser"
  dependency-type: direct:production
  update-type: version-update:semver-patch
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 2024-02-05 17:29:29 +00:00
dependabot[bot]
bdc05b4eb3
deps(npm): bump prettier from 3.2.4 to 3.2.5 in /dependencies (#5227) 
Bumps [prettier](https://github.com/prettier/prettier) from 3.2.4 to 3.2.5.
- [Release notes](https://github.com/prettier/prettier/releases)
- [Changelog](https://github.com/prettier/prettier/blob/main/CHANGELOG.md)
- [Commits](https://github.com/prettier/prettier/compare/3.2.4...3.2.5)

---
updated-dependencies:
- dependency-name: prettier
  dependency-type: direct:production
  update-type: version-update:semver-patch
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 2024-02-05 17:29:11 +00:00
dependabot[bot]
7a2ac4fa03
deps(npm): bump eslint-plugin-vue from 9.20.1 to 9.21.1 in /dependencies (#5228) 
Bumps [eslint-plugin-vue](https://github.com/vuejs/eslint-plugin-vue) from 9.20.1 to 9.21.1.
- [Release notes](https://github.com/vuejs/eslint-plugin-vue/releases)
- [Commits](https://github.com/vuejs/eslint-plugin-vue/compare/v9.20.1...v9.21.1)

---
updated-dependencies:
- dependency-name: eslint-plugin-vue
  dependency-type: direct:production
  update-type: version-update:semver-minor
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 2024-02-05 17:28:59 +00:00
dependabot[bot]
5b10868770
deps(npm): bump renovate from 37.161.0 to 37.173.0 in /dependencies (#5229) 
Bumps [renovate](https://github.com/renovatebot/renovate) from 37.161.0 to 37.173.0.
- [Release notes](https://github.com/renovatebot/renovate/releases)
- [Changelog](https://github.com/renovatebot/renovate/blob/main/.releaserc)
- [Commits](https://github.com/renovatebot/renovate/compare/37.161.0...37.173.0)

---
updated-dependencies:
- dependency-name: renovate
  dependency-type: direct:production
  update-type: version-update:semver-minor
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 2024-02-05 17:28:40 +00:00
dependabot[bot]
0b5a56dff8
deps(dev-docker): bump node in /dev-dependencies (#5230) 
Bumps node from 21.6.0-bookworm to 21.6.1-bookworm.

---
updated-dependencies:
- dependency-name: node
  dependency-type: direct:production
  update-type: version-update:semver-patch
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 2024-02-05 17:28:25 +00:00
dependabot[bot]
27bb6abc56
deps(docker): bump hashicorp/terraform from 1.7.1 to 1.7.2 (#5231) 
Bumps hashicorp/terraform from 1.7.1 to 1.7.2.

---
updated-dependencies:
- dependency-name: hashicorp/terraform
  dependency-type: direct:production
  update-type: version-update:semver-patch
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 2024-02-05 17:28:15 +00:00
dependabot[bot]
299dbf00a2
deps(docker): bump zricethezav/gitleaks from v8.18.1 to v8.18.2 (#5232) 
Bumps zricethezav/gitleaks from v8.18.1 to v8.18.2.

---
updated-dependencies:
- dependency-name: zricethezav/gitleaks
  dependency-type: direct:production
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 2024-02-05 17:27:31 +00:00
dependabot[bot]
ee5337123f
deps(docker): bump dart from 3.2.5-sdk to 3.2.6-sdk (#5233) 
Bumps dart from 3.2.5-sdk to 3.2.6-sdk.

---
updated-dependencies:
- dependency-name: dart
  dependency-type: direct:production
  update-type: version-update:semver-patch
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 2024-02-05 17:27:16 +00:00
dependabot[bot]
31c3195838
deps(docker): bump alpine/terragrunt from 1.7.1 to 1.7.2 (#5234) 
Bumps alpine/terragrunt from 1.7.1 to 1.7.2.

---
updated-dependencies:
- dependency-name: alpine/terragrunt
  dependency-type: direct:production
  update-type: version-update:semver-patch
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 2024-02-05 17:27:06 +00:00
dependabot[bot]
5f511c3a9d
deps(python): bump checkov from 3.2.1 to 3.2.8 in /dependencies/python (#5235) 
Bumps [checkov](https://github.com/bridgecrewio/checkov) from 3.2.1 to 3.2.8.
- [Release notes](https://github.com/bridgecrewio/checkov/releases)
- [Changelog](https://github.com/bridgecrewio/checkov/blob/main/CHANGELOG.md)
- [Commits](https://github.com/bridgecrewio/checkov/compare/3.2.1...3.2.8)

---
updated-dependencies:
- dependency-name: checkov
  dependency-type: direct:production
  update-type: version-update:semver-patch
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 2024-02-05 17:26:55 +00:00
dependabot[bot]
924b19397a
deps(python): bump snakefmt from 0.9.0 to 0.10.0 in /dependencies/python (#5236) 
Bumps [snakefmt](https://github.com/snakemake/snakefmt) from 0.9.0 to 0.10.0.
- [Release notes](https://github.com/snakemake/snakefmt/releases)
- [Changelog](https://github.com/snakemake/snakefmt/blob/master/CHANGELOG.md)
- [Commits](https://github.com/snakemake/snakefmt/compare/v0.9.0...v0.10.0)

---
updated-dependencies:
- dependency-name: snakefmt
  dependency-type: direct:production
  update-type: version-update:semver-minor
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 2024-02-05 17:26:38 +00:00
dependabot[bot]
b0183dce18
deps(python): bump snakemake from 8.4.1 to 8.4.3 in /dependencies/python (#5237) 
Bumps [snakemake](https://github.com/snakemake/snakemake) from 8.4.1 to 8.4.3.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](https://github.com/snakemake/snakemake/compare/v8.4.1...v8.4.3)

---
updated-dependencies:
- dependency-name: snakemake
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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 2024-02-05 17:26:23 +00:00
Marco Ferrari
20ded7178b
fix: don't print empty lines with default logging (#5238) 
- Check if Stdout and Stderr have elements before printing them.
- Run the super-linter action in a dedicated step using default logging to
  inspect how the output looks during CI.
 2024-02-05 18:24:07 +01:00
Marco Ferrari
d7790e4f1c
build: move linter verions logic outside runtime (#5197) 
Move the logic to build the linter versions file outside the main
runtime. There's no need to include it there because it's used only when
building the image.

Move the list of linters by name in linterVersions.sh because we don't
need it in any other place.
 2024-02-05 13:31:36 +01:00
Marco Ferrari
eded42747b
fix: don't add unnecessary empty lines (#5221) 2024-02-05 11:49:22 +01:00
Marco Ferrari
ef9449e2b0
feat: remove mypy cache (#5210) 
Remove MyPy cache after linting files so that users don't need to do as
root.
 2024-02-05 10:59:27 +01:00
Marco Ferrari
92e9cb3c85
build: fail on errors when installing chktex (#5214) 
Refactor the chktex installation scripts because lists of commands don't
fail if one of them exits with an error, even if set -e (errexit) is
set.

See the Bash reference manual, section 4.3.1 'The Set Builtin'.
 2024-02-05 10:31:43 +01:00
Marco Ferrari
5c67776f9d
ci: clone the repository before tagging (#5208) 
Clone the repository in the release workflow otherwise we cannot create
tags.
 2024-01-31 12:28:15 +01:00
github-actions[bot]
ff5037c060
chore(main): release 6.0.0 (#5027) 
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
 2024-01-31 10:51:31 +00:00
Marco Ferrari
bcbc45aa63
ci: ignore changelog and tests when testing action (#5206) 
Align FILTER_REGEX_IGNORE configuration when testing the local action to
the one we use in Makefile
 2024-01-31 11:26:01 +01:00
Marco Ferrari
ace79ca403
build: ignore changelog when linting codebase (#5205) 
CHANGELOG.md is automatically generated by the release workflow.
Ignore it when linting the codebase because it might not pass textlint
validation because of lowercase terms.
 2024-01-31 10:31:06 +01:00
Marco Ferrari
6015df2128
fix: ignore changelog when running textlint (#5204) 
The changelog is automatically generated, so we ignore it when running
textlint because some terms might have been lowercased.
 2024-01-30 21:35:10 +01:00
Marco Ferrari
99e41ce451
feat: run linters in parallel (#5177) 2024-01-30 19:24:55 +00:00
dependabot[bot]
0578ab8daf
deps(npm): bump renovate from 37.156.4 to 37.161.0 in /dependencies (#5203) 
Bumps [renovate](https://github.com/renovatebot/renovate) from 37.156.4 to 37.161.0.
- [Release notes](https://github.com/renovatebot/renovate/releases)
- [Changelog](https://github.com/renovatebot/renovate/blob/main/.releaserc)
- [Commits](https://github.com/renovatebot/renovate/compare/37.156.4...37.161.0)

---
updated-dependencies:
- dependency-name: renovate
  dependency-type: direct:production
  update-type: version-update:semver-minor
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 2024-01-30 12:58:39 +00:00
dependabot[bot]
c0bcd1a17d
deps(npm): bump @typescript-eslint/eslint-plugin in /dependencies (#5202) 
Bumps [@typescript-eslint/eslint-plugin](https://github.com/typescript-eslint/typescript-eslint/tree/HEAD/packages/eslint-plugin) from 6.19.1 to 6.20.0.
- [Release notes](https://github.com/typescript-eslint/typescript-eslint/releases)
- [Changelog](https://github.com/typescript-eslint/typescript-eslint/blob/main/packages/eslint-plugin/CHANGELOG.md)
- [Commits](https://github.com/typescript-eslint/typescript-eslint/commits/v6.20.0/packages/eslint-plugin)

---
updated-dependencies:
- dependency-name: "@typescript-eslint/eslint-plugin"
  dependency-type: direct:production
  update-type: version-update:semver-minor
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 2024-01-30 12:58:18 +00:00
dependabot[bot]
f9719bc567
deps(python): bump checkov from 3.2.0 to 3.2.1 in /dependencies/python (#5201) 
Bumps [checkov](https://github.com/bridgecrewio/checkov) from 3.2.0 to 3.2.1.
- [Release notes](https://github.com/bridgecrewio/checkov/releases)
- [Changelog](https://github.com/bridgecrewio/checkov/blob/main/CHANGELOG.md)
- [Commits](https://github.com/bridgecrewio/checkov/compare/3.2.0...3.2.1)

---
updated-dependencies:
- dependency-name: checkov
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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 2024-01-30 12:58:07 +00:00
dependabot[bot]
94d28767db
deps(python): bump snakemake from 8.4.0 to 8.4.1 in /dependencies/python (#5200) 
Bumps [snakemake](https://github.com/snakemake/snakemake) from 8.4.0 to 8.4.1.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](https://github.com/snakemake/snakemake/compare/v8.4.0...v8.4.1)

---
updated-dependencies:
- dependency-name: snakemake
  dependency-type: direct:production
  update-type: version-update:semver-patch
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 2024-01-30 12:57:55 +00:00
Marco Ferrari
5e2c028e0f
ci: update devcontainer definition (#5132) 
- Remove unneeded 'context' directive
- Update the list of extensions to install
- Configure tasks to run super-linter
- Remove redundant README
- Remove outdated launch configurations and scripts
 2024-01-30 12:09:46 +01:00
dependabot[bot]
72d8ac29c4
deps(npm): bump @typescript-eslint/parser in /dependencies (#5198) 
Bumps [@typescript-eslint/parser](https://github.com/typescript-eslint/typescript-eslint/tree/HEAD/packages/parser) from 6.19.0 to 6.20.0.
- [Release notes](https://github.com/typescript-eslint/typescript-eslint/releases)
- [Changelog](https://github.com/typescript-eslint/typescript-eslint/blob/main/packages/parser/CHANGELOG.md)
- [Commits](https://github.com/typescript-eslint/typescript-eslint/commits/v6.20.0/packages/parser)

---
updated-dependencies:
- dependency-name: "@typescript-eslint/parser"
  dependency-type: direct:production
  update-type: version-update:semver-minor
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 2024-01-30 08:11:54 +00:00
dependabot[bot]
c9c1cd00d4
deps(dev-npm): bump release-please in /dev-dependencies (#5193) 
Bumps [release-please](https://github.com/googleapis/release-please) from 16.7.0 to 16.8.0.
- [Release notes](https://github.com/googleapis/release-please/releases)
- [Changelog](https://github.com/googleapis/release-please/blob/main/CHANGELOG.md)
- [Commits](https://github.com/googleapis/release-please/compare/v16.7.0...v16.8.0)

---
updated-dependencies:
- dependency-name: release-please
  dependency-type: direct:production
  update-type: version-update:semver-minor
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 2024-01-30 08:11:30 +00:00
dependabot[bot]
2f1bfef7f9
deps(dev-npm): bump @commitlint/cli in /dev-dependencies (#5192) 
Bumps [@commitlint/cli](https://github.com/conventional-changelog/commitlint/tree/HEAD/@commitlint/cli) from 18.5.0 to 18.6.0.
- [Release notes](https://github.com/conventional-changelog/commitlint/releases)
- [Changelog](https://github.com/conventional-changelog/commitlint/blob/master/@commitlint/cli/CHANGELOG.md)
- [Commits](https://github.com/conventional-changelog/commitlint/commits/v18.6.0/@commitlint/cli)

---
updated-dependencies:
- dependency-name: "@commitlint/cli"
  dependency-type: direct:production
  update-type: version-update:semver-minor
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 2024-01-30 08:11:11 +00:00
Marco Ferrari
9bab4a90e8
chore: simplify updateSSL (#5130) 
Run command directly instead of checking their exit code afterwards.
 2024-01-30 09:05:47 +01:00
Marco Ferrari
05009f2816
chore: simplify error code checks (#5131) 
Instead of loading the error code and checking it, shorten checks by
running the command directly.
 2024-01-30 08:48:24 +01:00
dependabot[bot]
d0ec3f0ddf
deps(npm): bump markdownlint-cli from 0.38.0 to 0.39.0 in /dependencies (#5191) 
Bumps [markdownlint-cli](https://github.com/igorshubovych/markdownlint-cli) from 0.38.0 to 0.39.0.
- [Release notes](https://github.com/igorshubovych/markdownlint-cli/releases)
- [Commits](https://github.com/igorshubovych/markdownlint-cli/compare/v0.38.0...v0.39.0)

---
updated-dependencies:
- dependency-name: markdownlint-cli
  dependency-type: direct:production
  update-type: version-update:semver-minor
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 2024-01-29 21:10:27 +00:00
dependabot[bot]
e1b2a99272
deps(java): bump com.puppycrawl.tools:checkstyle (#5179) 
Bumps [com.puppycrawl.tools:checkstyle](https://github.com/checkstyle/checkstyle) from 10.12.7 to 10.13.0.
- [Release notes](https://github.com/checkstyle/checkstyle/releases)
- [Commits](https://github.com/checkstyle/checkstyle/compare/checkstyle-10.12.7...checkstyle-10.13.0)

---
updated-dependencies:
- dependency-name: com.puppycrawl.tools:checkstyle
  dependency-type: direct:production
  update-type: version-update:semver-minor
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 2024-01-29 20:47:41 +00:00
dependabot[bot]
a090a4cf0e
deps(github-actions): bump peter-evans/create-issue-from-file (#5180) 
Bumps [peter-evans/create-issue-from-file](https://github.com/peter-evans/create-issue-from-file) from 4 to 5.
- [Release notes](https://github.com/peter-evans/create-issue-from-file/releases)
- [Commits](https://github.com/peter-evans/create-issue-from-file/compare/v4...v5)

---
updated-dependencies:
- dependency-name: peter-evans/create-issue-from-file
  dependency-type: direct:production
  update-type: version-update:semver-major
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 2024-01-29 20:47:29 +00:00
dependabot[bot]
91dab1ed86
deps(docker): bump hashicorp/terraform from 1.7.0 to 1.7.1 (#5181) 
Bumps hashicorp/terraform from 1.7.0 to 1.7.1.

---
updated-dependencies:
- dependency-name: hashicorp/terraform
  dependency-type: direct:production
  update-type: version-update:semver-patch
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 2024-01-29 20:47:09 +00:00
dependabot[bot]
a1be60308a
deps(docker): bump alpine/terragrunt from 1.7.0 to 1.7.1 (#5182) 
Bumps alpine/terragrunt from 1.7.0 to 1.7.1.

---
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- dependency-name: alpine/terragrunt
  dependency-type: direct:production
  update-type: version-update:semver-patch
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 2024-01-29 20:47:00 +00:00
dependabot[bot]
166d093eab
deps(npm): bump react-intl from 6.6.1 to 6.6.2 in /dependencies (#5183) 
Bumps [react-intl](https://github.com/formatjs/formatjs) from 6.6.1 to 6.6.2.
- [Release notes](https://github.com/formatjs/formatjs/releases)
- [Commits](https://github.com/formatjs/formatjs/compare/react-intl@6.6.1...react-intl@6.6.2)

---
updated-dependencies:
- dependency-name: react-intl
  dependency-type: direct:production
  update-type: version-update:semver-patch
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 2024-01-29 20:46:50 +00:00
dependabot[bot]
24624f3f5e
deps(python): bump cfn-lint in /dependencies/python (#5184) 
Bumps [cfn-lint](https://github.com/aws-cloudformation/cfn-python-lint) from 0.84.0 to 0.85.0.
- [Release notes](https://github.com/aws-cloudformation/cfn-python-lint/releases)
- [Changelog](https://github.com/aws-cloudformation/cfn-lint/blob/main/CHANGELOG.md)
- [Commits](https://github.com/aws-cloudformation/cfn-python-lint/compare/v0.84.0...v0.85.0)

---
updated-dependencies:
- dependency-name: cfn-lint
  dependency-type: direct:production
  update-type: version-update:semver-minor
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 2024-01-29 20:46:38 +00:00
dependabot[bot]
1079b8ac6c
deps(python): bump snakemake from 8.2.3 to 8.4.0 in /dependencies/python (#5185) 
Bumps [snakemake](https://github.com/snakemake/snakemake) from 8.2.3 to 8.4.0.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](https://github.com/snakemake/snakemake/compare/v8.2.3...v8.4.0)

---
updated-dependencies:
- dependency-name: snakemake
  dependency-type: direct:production
  update-type: version-update:semver-minor
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 2024-01-29 20:46:20 +00:00
dependabot[bot]
ac63664cb9
deps(python): bump checkov from 3.1.68 to 3.2.0 in /dependencies/python (#5186) 
Bumps [checkov](https://github.com/bridgecrewio/checkov) from 3.1.68 to 3.2.0.
- [Release notes](https://github.com/bridgecrewio/checkov/releases)
- [Changelog](https://github.com/bridgecrewio/checkov/blob/main/CHANGELOG.md)
- [Commits](https://github.com/bridgecrewio/checkov/compare/3.1.68...3.2.0)

---
updated-dependencies:
- dependency-name: checkov
  dependency-type: direct:production
  update-type: version-update:semver-minor
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 2024-01-29 20:45:48 +00:00
dependabot[bot]
b95d812ee6
deps(python): bump black from 23.12.1 to 24.1.1 in /dependencies/python (#5187) 
Bumps [black](https://github.com/psf/black) from 23.12.1 to 24.1.1.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/23.12.1...24.1.1)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-major
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 2024-01-29 20:45:27 +00:00
dependabot[bot]
3c4013fff8
deps(npm): bump renovate from 37.146.0 to 37.156.4 in /dependencies (#5188) 
Bumps [renovate](https://github.com/renovatebot/renovate) from 37.146.0 to 37.156.4.
- [Release notes](https://github.com/renovatebot/renovate/releases)
- [Changelog](https://github.com/renovatebot/renovate/blob/main/.releaserc)
- [Commits](https://github.com/renovatebot/renovate/compare/37.146.0...37.156.4)

---
updated-dependencies:
- dependency-name: renovate
  dependency-type: direct:production
  update-type: version-update:semver-minor
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 2024-01-29 20:45:05 +00:00
dependabot[bot]
a2610ba98a
deps(npm): bump eslint-plugin-jsonc in /dependencies (#5189) 
Bumps [eslint-plugin-jsonc](https://github.com/ota-meshi/eslint-plugin-jsonc) from 2.12.2 to 2.13.0.
- [Release notes](https://github.com/ota-meshi/eslint-plugin-jsonc/releases)
- [Changelog](https://github.com/ota-meshi/eslint-plugin-jsonc/blob/master/CHANGELOG.md)
- [Commits](https://github.com/ota-meshi/eslint-plugin-jsonc/compare/v2.12.2...v2.13.0)

---
updated-dependencies:
- dependency-name: eslint-plugin-jsonc
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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 2024-01-29 20:44:49 +00:00