diff --git a/dependencies/Pipfile.lock b/dependencies/Pipfile.lock
index 8f34be18..bb66c7b7 100644
--- a/dependencies/Pipfile.lock
+++ b/dependencies/Pipfile.lock
@@ -89,19 +89,19 @@
         },
         "boto3": {
             "hashes": [
-                "sha256:68fbc8b7c13448f53164692163cc056fa242f8d7c39abbb77efc67b174b8f2a9",
-                "sha256:a0f5a806d072bd532c86ef10a2a5f7f1ca7e8e0e506561a21ab5d462a93aa810"
+                "sha256:4c1638a31da2948180bf66fac2971e0350b6b04c1b90910cd15247c77209ccaf",
+                "sha256:ca675c724fa0fe05e992a7146cc5e1a3b3262c4323c83c7a8fcc69f9e5e47f8b"
             ],
             "markers": "python_version >= '3.6'",
-            "version": "==1.18.6"
+            "version": "==1.18.11"
         },
         "botocore": {
             "hashes": [
-                "sha256:c92dc2b69aec36b7482e5b05ac0a00d65ac972d745a74546942f09c95e68d335",
-                "sha256:cabff036f702411f47c6dae09134315e0b524c8eda6bb1de99ee75fc1ee07f7f"
+                "sha256:601f820ed340a85ed62d91b4eaeb768b9ff0529add75a074592fb7c51db7bd00",
+                "sha256:b5e9128a259fc0fe5a8c2b717f5d7e8a1321321981b5d5679939e12d4142c0f3"
             ],
             "markers": "python_version >= '3.6'",
-            "version": "==1.21.6"
+            "version": "==1.21.11"
         },
         "bracex": {
             "hashes": [
@@ -178,11 +178,11 @@
         },
         "charset-normalizer": {
             "hashes": [
-                "sha256:88fce3fa5b1a84fdcb3f603d889f723d1dd89b26059d0123ca435570e848d5e1",
-                "sha256:c46c3ace2d744cfbdebceaa3c19ae691f53ae621b39fd7570f59d14fb7f2fd12"
+                "sha256:0c8911edd15d19223366a194a513099a302055a962bca2cec0f54b8b63175d8b",
+                "sha256:f23667ebe1084be45f6ae0538e4a5a865206544097e4e8bbcacf42cd02a348f3"
             ],
             "markers": "python_version >= '3'",
-            "version": "==2.0.3"
+            "version": "==2.0.4"
         },
         "click": {
             "hashes": [
@@ -323,13 +323,6 @@
             "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==0.8.2"
         },
-        "decorator": {
-            "hashes": [
-                "sha256:41fa54c2a0cc4ba648be4fd43cff00aedf5b9465c9bf18d64325bc225f08f760",
-                "sha256:e3a62f0520172440ca0dcc823749319382e377f37f140a0b99ef45fecb84bfe7"
-            ],
-            "version": "==4.4.2"
-        },
         "docutils": {
             "hashes": [
                 "sha256:686577d2e4c32380bb50cbb22f575ed742d58168cee37e99117a854bcd88f125",
@@ -421,7 +414,7 @@
                 "sha256:b85d0567b8666149a93172712e68920734333c0ce7e89b78b3e987f71e5ed4f9",
                 "sha256:cdf6525904cc597730141d61b36f2e4b8ecc257c420fa2f4549bac2c2d0cb72f"
             ],
-            "markers": "python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2'",
+            "markers": "python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==0.10.0"
         },
         "jsonpatch": {
@@ -620,11 +613,11 @@
         },
         "networkx": {
             "hashes": [
-                "sha256:0635858ed7e989f4c574c2328380b452df892ae85084144c73d8cd819f0c4e06",
-                "sha256:109cd585cac41297f71103c3c42ac6ef7379f29788eb54cb751be5a663bb235a"
+                "sha256:2306f1950ce772c5a59a57f5486d59bb9cab98497c45fc49cbc45ac0dec119bb",
+                "sha256:5fcb7004be69e8fbdf07dcb502efa5c77cadcaad6982164134eeb9721f826c2e"
             ],
             "markers": "python_version >= '3.5'",
-            "version": "==2.5.1"
+            "version": "==2.6.2"
         },
         "packaging": {
             "hashes": [
@@ -732,11 +725,11 @@
         },
         "pyparsing": {
             "hashes": [
-                "sha256:c203ec8783bf771a155b207279b9bccb8dea02d8f0c9e5f8ead507bc3246ecc1",
-                "sha256:ef9d7589ef3c200abe66653d3f1ab1033c3c419ae9b9bdb1240a85b024efc88b"
+                "sha256:1c6409312ce2ce2997896af5756753778d5f1603666dba5587804f09ad82ed27",
+                "sha256:f4896b4cc085a1f8f8ae53a1a90db5a86b3825ff73eb974dffee3d9e701007f4"
             ],
-            "markers": "python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2'",
-            "version": "==2.4.7"
+            "markers": "python_version >= '3.5'",
+            "version": "==3.0.0b2"
         },
         "pyrsistent": {
             "hashes": [
@@ -770,7 +763,7 @@
                 "sha256:0123cacc1627ae19ddf3c27a5de5bd67ee4586fbdd6440d9748f8abb483d3e86",
                 "sha256:961d03dc3453ebbc59dbdea9e4e11c5651520a876d0f4db161e8674aae935da9"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2'",
+            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==2.8.2"
         },
         "pyyaml": {
@@ -805,7 +798,7 @@
                 "sha256:fdc842473cd33f45ff6bce46aea678a54e3d21f1b61a7750ce3c498eedfe25d6",
                 "sha256:fe69978f3f768926cfa37b867e3843918e012cf83f680806599ddce33c2c68b0"
             ],
-            "markers": "python_version != '3.4' and python_version != '3.5'",
+            "markers": "python_version not in '3.4, 3.5'",
             "version": "==5.4.1"
         },
         "ratelimiter": {
@@ -909,7 +902,7 @@
                 "sha256:dc6a613d6c74eef5a14a214d433d06291526145431c3b964f5e16529b1842bed",
                 "sha256:de9c6b8a1ba52919ae919f3ae96abb72b994dd0350226e28f3686cb4f142165c"
             ],
-            "markers": "platform_python_implementation == 'CPython' and python_version < '3.10'",
+            "markers": "python_version < '3.10' and platform_python_implementation == 'CPython'",
             "version": "==0.2.6"
         },
         "s3transfer": {
@@ -925,7 +918,7 @@
                 "sha256:1e61c37477a1626458e36f7b1d82aa5c9b094fa4802892072e49de9c60c4c926",
                 "sha256:8abb2f1d86890a2dfb989f9a77cfcfd3e47c2a354b01111771326f8aa26e0254"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2'",
+            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==1.16.0"
         },
         "smart-open": {
@@ -946,11 +939,11 @@
         },
         "snakefmt": {
             "hashes": [
-                "sha256:3e48994b92ea5fb0db03fcf4e315dbffce4041f143a5637262781fe5fd57f068",
-                "sha256:a211660d1e5436c57b52a5b20c82c0663b7882242d2f25fdcd3583656a6ef83b"
+                "sha256:6dc37e36091dfacac7b9682576422fdc4ed75b099a19165933fd2317927a0669",
+                "sha256:906739b3084f7040d7272ee778441046c64818763c93dfc1238722cc14175fb6"
             ],
             "index": "pypi",
-            "version": "==0.4.1"
+            "version": "==0.4.2"
         },
         "snakemake": {
             "hashes": [
@@ -985,7 +978,7 @@
                 "sha256:806143ae5bfb6a3c6e736a764057db0e6a0e05e338b5630894a5f779cabb4f9b",
                 "sha256:b3bda1d108d5dd99f4a20d24d9c348e91c4db7ab1b749200bded2f839ccbe68f"
             ],
-            "markers": "python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2'",
+            "markers": "python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==0.10.2"
         },
         "toposort": {