diff --git a/dependencies/Pipfile.lock b/dependencies/Pipfile.lock
index e1771dcf..5d4cf061 100644
--- a/dependencies/Pipfile.lock
+++ b/dependencies/Pipfile.lock
@@ -18,8 +18,7 @@
     "default": {
         "amply": {
             "hashes": [
-                "sha256:6e5d53af62772790ba82a989a3de72b8ce5c1cd809613c06f7cb061f7ec34dc8",
-                "sha256:c93da6113cac809487abc6565f41e37b9b8a5d469dcfaf4443d8d35befb181af"
+                "sha256:6e5d53af62772790ba82a989a3de72b8ce5c1cd809613c06f7cb061f7ec34dc8"
             ],
             "version": "==0.1.2"
         },
@@ -42,7 +41,6 @@
                 "sha256:2f4078c2a41bf377eea06d71c9d2ba4eb8f6b1af2135bec27bbbb7d8f12bb703",
                 "sha256:bc58d83eb610252fd8de6363e39d4f1d0619c894b0ed24603b881c02e64c7386"
             ],
-            "markers": "python_version >= '3.5'",
             "version": "==2.4.2"
         },
         "attrs": {
@@ -50,7 +48,6 @@
                 "sha256:26b54ddbbb9ee1d34d5d3668dd37d6cf74990ab23c828c2888dccdceee395594",
                 "sha256:fce7fc47dfc976152e82d53ff92fa0407700c21acd20886a13777a0d20e655dc"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==20.2.0"
         },
         "aws-sam-translator": {
@@ -71,17 +68,16 @@
         },
         "boto3": {
             "hashes": [
-                "sha256:2ab73b0c400ab8c7df84bee7564ef8a0813021da28dd7a05fcbffb77a8ae9de9",
-                "sha256:bb2222fa02fcd09b39e581e532d4f013ea850742d8cd46e9c10a21028b6d2ef5"
+                "sha256:89939e68c6200154c326dfe791c6492ea8f78ba966de5e57308bc48847a16a91"
             ],
-            "version": "==1.14.56"
+            "version": "==1.14.58"
         },
         "botocore": {
             "hashes": [
-                "sha256:5a72e1758f3c89c663d74eb733d313f69d059ab4fd571ad41829d666e3367392",
-                "sha256:73fd22d70611fdcfbb44d1e5f77f7edf8a45a58e6286d50963cc19f9cf9e3e67"
+                "sha256:37cc3f1013c00dc0f061582198d6b785dadf147bd99307d41c5c0e47debca65c",
+                "sha256:acd2df778a5e12b2a16ac040ce6e91a6c6f2d7ac67bd4f966472ce5c68b5b62d"
             ],
-            "version": "==1.17.56"
+            "version": "==1.17.58"
         },
         "certifi": {
             "hashes": [
@@ -110,7 +106,6 @@
                 "sha256:d2b5255c7c6349bc1bd1e59e08cd12acbbd63ce649f2588755783aa94dfb6b1a",
                 "sha256:dacca89f4bfadd5de3d7489b7c8a566eee0d3676333fbb50030263894c38c0dc"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4'",
             "version": "==7.1.2"
         },
         "configargparse": {
@@ -147,7 +142,6 @@
                 "sha256:f826e843138698501cbf1a21233f724b851b1e475fad532b638ac5904e115f10",
                 "sha256:fa9f39ac88dc6286672b9dd286fe459646da48133c877a927af24803eaea441e"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==0.8.2"
         },
         "decorator": {
@@ -163,7 +157,6 @@
                 "sha256:9e4d7ecfc600058e07ba661411a2b7de2fd0fafa17d1a7f7361cd47b1175c827",
                 "sha256:a2aeea129088da402665e92e0b25b04b073c04b2dce4ab65caaa38b7ce2e1a99"
             ],
-            "markers": "python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2'",
             "version": "==0.15.2"
         },
         "flake8": {
@@ -179,7 +172,6 @@
                 "sha256:91f36bfb1ab7949b3b40e23736db18231bf7593edada2ba5c3a174a7b23657ac",
                 "sha256:c9e1f2d0db7ddb9a704c2a0217be31214e91a4fe1dea1efad19ae42ba0c285c9"
             ],
-            "markers": "python_version >= '3.4'",
             "version": "==4.0.5"
         },
         "gitpython": {
@@ -187,7 +179,6 @@
                 "sha256:080bf8e2cf1a2b907634761c2eaefbe83b69930c94c66ad11b65a8252959f912",
                 "sha256:1858f4fd089abe92ae465f01d5aaaf55e937eca565fb2c1fce35a51b5f85c910"
             ],
-            "markers": "python_version >= '3.4'",
             "version": "==3.1.8"
         },
         "idna": {
@@ -195,7 +186,6 @@
                 "sha256:b307872f855b18632ce0c21c5e45be78c0ea7ae4c15c828c20788b26921eb3f6",
                 "sha256:b97d804b1e9b523befed77c48dacec60e6dcb0b5391d57af6a65a312a90648c0"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==2.10"
         },
         "ipython-genutils": {
@@ -207,18 +197,16 @@
         },
         "isort": {
             "hashes": [
-                "sha256:92533892058de0306e51c88f22ece002a209dc8e80288aa3cec6d443060d584f",
-                "sha256:a200d47b7ee8b7f7d0a9646650160c4a51b6a91a9413fd31b1da2c4de789f5d3"
+                "sha256:171c5f365791073426b5ed3a156c2081a47f88c329161fd28228ff2da4c97ddb",
+                "sha256:ba91218eee31f1e300ecc079ef0c524cea3fc41bfbb979cbdf5fd3a889e3cfed"
             ],
-            "markers": "python_version >= '3.6' and python_version < '4.0'",
-            "version": "==5.5.1"
+            "version": "==5.5.2"
         },
         "jmespath": {
             "hashes": [
                 "sha256:b85d0567b8666149a93172712e68920734333c0ce7e89b78b3e987f71e5ed4f9",
                 "sha256:cdf6525904cc597730141d61b36f2e4b8ecc257c420fa2f4549bac2c2d0cb72f"
             ],
-            "markers": "python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2'",
             "version": "==0.10.0"
         },
         "jsonpatch": {
@@ -234,7 +222,6 @@
                 "sha256:c192ba86648e05fdae4f08a17ec25180a9aef5008d973407b581798a83975362",
                 "sha256:ff379fa021d1b81ab539f5ec467c7745beb1a5671463f9dcc2b2d458bd361c1e"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==2.0"
         },
         "jsonschema": {
@@ -255,7 +242,6 @@
                 "sha256:394fd5dd787e7c8861741880bdf8a00ce39f95de5d18e579c74b882522219e7e",
                 "sha256:a4ee613c060fe5697d913416fc9d553599c05e4492d58fac1192c9a6844abb21"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4'",
             "version": "==4.6.3"
         },
         "lazy-object-proxy": {
@@ -282,7 +268,6 @@
                 "sha256:efa1909120ce98bbb3777e8b6f92237f5d5c8ea6758efea36a473e1d38f7d3e4",
                 "sha256:f3900e8a5de27447acbf900b4750b0ddfd7ec1ea7fbaf11dfa911141bc522af0"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==1.4.3"
         },
         "mccabe": {
@@ -297,7 +282,6 @@
                 "sha256:54d4d6354835a936bad7e8182dcd003ca3dc0cedfee5a306090e04854343b340",
                 "sha256:ea55c9b817855e2dfcd3f66d74857342612a60b1f09653440f4a5845e6e3523f"
             ],
-            "markers": "python_version >= '3.5'",
             "version": "==5.0.7"
         },
         "networkx": {
@@ -329,7 +313,6 @@
                 "sha256:f2018461733b23f308c298653c8903d32aaad7873d25e1d228765e91ae42c3f2",
                 "sha256:ff1977ba1a5f71f89166d5145c3da1cea89a0fdb044075a12c720ee9123ec818"
             ],
-            "markers": "python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==5.7.2"
         },
         "pulp": {
@@ -344,7 +327,6 @@
                 "sha256:2295e7b2f6b5bd100585ebcb1f616591b652db8a741695b3d8f5d28bdc934367",
                 "sha256:c58a7d2815e0e8d7972bf1803331fb0152f867bd89adf8a01dfd55085434192e"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==2.6.0"
         },
         "pyflakes": {
@@ -352,7 +334,6 @@
                 "sha256:0d94e0e05a19e57a99444b6ddcf9a6eb2e5c68d3ca1e98e90707af8152c90a92",
                 "sha256:35b2d75ee967ea93b55750aa9edbbf72813e06a66ba54438df2cfac9e3c27fc8"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==2.2.0"
         },
         "pylint": {
@@ -365,24 +346,22 @@
         },
         "pyparsing": {
             "hashes": [
-                "sha256:c203ec8783bf771a155b207279b9bccb8dea02d8f0c9e5f8ead507bc3246ecc1",
-                "sha256:ef9d7589ef3c200abe66653d3f1ab1033c3c419ae9b9bdb1240a85b024efc88b"
+                "sha256:1060635ca5ac864c2b7bc7b05a448df4e32d7d8c65e33cbe1514810d339672a2",
+                "sha256:56a551039101858c9e189ac9e66e330a03fb7079e97ba6b50193643905f450ce"
             ],
-            "markers": "python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2'",
-            "version": "==2.4.7"
+            "version": "==3.0.0a2"
         },
         "pyrsistent": {
             "hashes": [
-                "sha256:28669905fe725965daa16184933676547c5bb40a5153055a8dee2a4bd7933ad3"
+                "sha256:27515d2d5db0629c7dadf6fbe76973eb56f098c1b01d36de42eb69220d2c19e4"
             ],
-            "version": "==0.16.0"
+            "version": "==0.17.2"
         },
         "python-dateutil": {
             "hashes": [
                 "sha256:73ebfe9dbf22e832286dafa60473e4cd239f8592f699aa5adaf10050e6e1823c",
                 "sha256:75bb3f31ea686f1197762692a9ee6a7550b59fc6ca3a1f4b5d7e32fb98e2da2a"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2'",
             "version": "==2.8.1"
         },
         "pyyaml": {
@@ -440,7 +419,6 @@
                 "sha256:b3559a131db72c33ee969480840fff4bb6dd111de7dd27c8ee1f820f4f00231b",
                 "sha256:fe75cc94a9443b9246fc7049224f75604b113c36acb93f87b80ed42c44cbb898"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4'",
             "version": "==2.24.0"
         },
         "s3transfer": {
@@ -455,7 +433,6 @@
                 "sha256:30639c035cdb23534cd4aa2dd52c3bf48f06e5f4a941509c8bafd8ce11080259",
                 "sha256:8b74bedcbbbaca38ff6d7491d76f2b06b3592611af620f8426e82dddb04a5ced"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2'",
             "version": "==1.15.0"
         },
         "smmap": {
@@ -463,7 +440,6 @@
                 "sha256:54c44c197c819d5ef1991799a7e30b662d1e520f2ac75c9efbeb54a742214cf4",
                 "sha256:9c98bbd1f9786d22f14b3d4126894d56befb835ec90cef151af566c7e19b5d24"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==3.0.4"
         },
         "snakefmt": {
@@ -476,10 +452,10 @@
         },
         "snakemake": {
             "hashes": [
-                "sha256:d8bbde85fa8d93bd6312cae5d39247b316ead0589022aa7b48760374b1994b79"
+                "sha256:1a66eff7fcbc90a1d01749f071492a417d2ad94daccc6003f6f5d0ece0b98860"
             ],
             "index": "pypi",
-            "version": "==5.23.0"
+            "version": "==5.24.0"
         },
         "toml": {
             "hashes": [
@@ -500,7 +476,6 @@
                 "sha256:86c9351f94f95de9db8a04ad8e892da299a088a64fd283f9f6f18770ae5eae1b",
                 "sha256:9664ec0c526e48e7b47b7d14cd6b252efa03e0129011de0a9c1d70315d4309c3"
             ],
-            "markers": "python_version >= '3.7'",
             "version": "==5.0.4"
         },
         "typed-ast": {