diff --git a/dependencies/Pipfile.lock b/dependencies/Pipfile.lock
index 33fdd379..6cd8ba55 100644
--- a/dependencies/Pipfile.lock
+++ b/dependencies/Pipfile.lock
@@ -18,11 +18,9 @@
     "default": {
         "amply": {
             "hashes": [
-                "sha256:f8a846a544750493f45e75e9b44c393144be5728701df4f596b1fa5595d263fd",
                 "sha256:cb12dcb49d16b168c02be128a1527ecde50211e4bd94af76ff4e67707f5a2d38",
-                "sha256:baa05b059759807cdbe897624ed037e1b045e6282cd500ee87ec78b2e504a669"
+                "sha256:f8a846a544750493f45e75e9b44c393144be5728701df4f596b1fa5595d263fd"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==0.1.4"
         },
         "appdirs": {
@@ -34,17 +32,16 @@
         },
         "argcomplete": {
             "hashes": [
-                "sha256:5cd1ac4fc49c29d6016fc2cc4b19a3c08c3624544503495bf25989834c443898",
-                "sha256:849c2444c35bb2175aea74100ca5f644c29bf716429399c0f2203bb5d9a8e4e6"
+                "sha256:17f01a9b9b9ece3e6b07058eae737ad6e10de8b4e149105f84614783913aba71",
+                "sha256:de0e1282330940d52ea92a80fea2e4b9e0da1932aaa570f84d268939d1897b04"
             ],
-            "version": "==1.12.1"
+            "version": "==1.12.2"
         },
         "astroid": {
             "hashes": [
                 "sha256:2f4078c2a41bf377eea06d71c9d2ba4eb8f6b1af2135bec27bbbb7d8f12bb703",
                 "sha256:bc58d83eb610252fd8de6363e39d4f1d0619c894b0ed24603b881c02e64c7386"
             ],
-            "markers": "python_version >= '3.5'",
             "version": "==2.4.2"
         },
         "attrs": {
@@ -52,16 +49,15 @@
                 "sha256:31b2eced602aa8423c2aea9c76a724617ed67cf9513173fd3a4f03e3a929c7e6",
                 "sha256:832aa3cde19744e49938b91fea06d69ecb9e649c93ba974535d08ad92164f700"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==20.3.0"
         },
         "aws-sam-translator": {
             "hashes": [
-                "sha256:1a1903fd1fda55bac5ba66b97b24c4b6b599973844e4ea45d0d1bcf381c22825",
-                "sha256:22b89488e449a3f368ae8ab1eaacc1ebb190970de31d6492904252ab21117419",
-                "sha256:bd9dbdf0773b52bb5bf652954bf47ab6bd5e2bd752255209207c8a4e52bb3735"
+                "sha256:3a1d73d098161e60966b0d53bb310c98e4f66101688cce3d1697903643782d79",
+                "sha256:65749571042e704027bbcaabe6dddd5d13ab54959c46e60c347918d6b85551fd",
+                "sha256:b87a61cffba8f29e4f1b5eb43a4abafdfb14b76aedc716517d48dbdf0b1f989a"
             ],
-            "version": "==1.30.1"
+            "version": "==1.31.0"
         },
         "black": {
             "hashes": [
@@ -73,17 +69,17 @@
         },
         "boto3": {
             "hashes": [
-                "sha256:066b9dfd466e42c206dbbd282da030a6d5cade4ef7e9f1c90a79ebde1310b217",
-                "sha256:bb8ecadd1c8dc8b27c72642567adcd910b2fc3c2fe95b5df3796b647dc47abb9"
+                "sha256:7a76e9012bd7a47da0f75671d98a6cc2db0734b6f3ca17b34acfd381ebca2fb9",
+                "sha256:f12fc470d170b283dcea921f0ae3744dd8d0fc5263dcc8974c891edefb008a17"
             ],
-            "version": "==1.16.22"
+            "version": "==1.16.24"
         },
         "botocore": {
             "hashes": [
-                "sha256:5cee9d02d335a0c43d225da6595e6f95970a01ecaebeba757ac22130f2d31495",
-                "sha256:87d77925ea8d35898ff1627f6f97d396bed44d37fff960daae181a76ba413546"
+                "sha256:5975b10dbc6a70c6789b95d083fbb93e4191f13afe25cd7a834cf2168fddbcd8",
+                "sha256:7d4efbc621e3fe17226b356a65526210c9284f9a823ce7be7209108644823c40"
             ],
-            "version": "==1.19.22"
+            "version": "==1.19.24"
         },
         "certifi": {
             "hashes": [
@@ -112,7 +108,6 @@
                 "sha256:d2b5255c7c6349bc1bd1e59e08cd12acbbd63ce649f2588755783aa94dfb6b1a",
                 "sha256:dacca89f4bfadd5de3d7489b7c8a566eee0d3676333fbb50030263894c38c0dc"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4'",
             "version": "==7.1.2"
         },
         "configargparse": {
@@ -190,7 +185,6 @@
                 "sha256:f826e843138698501cbf1a21233f724b851b1e475fad532b638ac5904e115f10",
                 "sha256:fa9f39ac88dc6286672b9dd286fe459646da48133c877a927af24803eaea441e"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==0.8.2"
         },
         "decorator": {
@@ -205,7 +199,6 @@
                 "sha256:0c5b78adfbf7762415433f5515cd5c9e762339e23369dbe8000d84a4bf4ab3af",
                 "sha256:c2de3a60e9e7d07be26b7f2b00ca0309c207e06c100f9cc2a94931fc75a478fc"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4'",
             "version": "==0.16"
         },
         "flake8": {
@@ -221,7 +214,6 @@
                 "sha256:91f36bfb1ab7949b3b40e23736db18231bf7593edada2ba5c3a174a7b23657ac",
                 "sha256:c9e1f2d0db7ddb9a704c2a0217be31214e91a4fe1dea1efad19ae42ba0c285c9"
             ],
-            "markers": "python_version >= '3.4'",
             "version": "==4.0.5"
         },
         "gitpython": {
@@ -229,7 +221,6 @@
                 "sha256:6eea89b655917b500437e9668e4a12eabdcf00229a0df1762aabd692ef9b746b",
                 "sha256:befa4d101f91bad1b632df4308ec64555db684c360bd7d2130b4807d49ce86b8"
             ],
-            "markers": "python_version >= '3.4'",
             "version": "==3.1.11"
         },
         "idna": {
@@ -237,7 +228,6 @@
                 "sha256:b307872f855b18632ce0c21c5e45be78c0ea7ae4c15c828c20788b26921eb3f6",
                 "sha256:b97d804b1e9b523befed77c48dacec60e6dcb0b5391d57af6a65a312a90648c0"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==2.10"
         },
         "importlib-metadata": {
@@ -245,7 +235,6 @@
                 "sha256:90bb658cdbbf6d1735b6341ce708fc7024a3e14e99ffdc5783edea9f9b077f83",
                 "sha256:dc15b2969b4ce36305c51eebe62d418ac7791e9a157911d58bfb1f9ccd8e2070"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4'",
             "version": "==1.7.0"
         },
         "ipython-genutils": {
@@ -268,23 +257,21 @@
                 "sha256:b85d0567b8666149a93172712e68920734333c0ce7e89b78b3e987f71e5ed4f9",
                 "sha256:cdf6525904cc597730141d61b36f2e4b8ecc257c420fa2f4549bac2c2d0cb72f"
             ],
-            "markers": "python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==0.10.0"
         },
         "jsonpatch": {
             "hashes": [
-                "sha256:83ff23119b336ea2feffa682307eb7269b58097b4e88c089a4950d946442db16",
-                "sha256:e45df18b0ab7df1925f20671bbc3f6bd0b4b556fb4b9c5d97684b0a7eac01744"
+                "sha256:4d08af10d71723b5b2924da6ba90f273a4d1a5c6accfb605eb970cb2f9b29cf9",
+                "sha256:86eaaccfac8891c6a09ab48aec13fb5921ff32c838e7a19981f0d2b94915f668"
             ],
             "markers": "python_version != '3.4'",
-            "version": "==1.26"
+            "version": "==1.27"
         },
         "jsonpointer": {
             "hashes": [
                 "sha256:c192ba86648e05fdae4f08a17ec25180a9aef5008d973407b581798a83975362",
                 "sha256:ff379fa021d1b81ab539f5ec467c7745beb1a5671463f9dcc2b2d458bd361c1e"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==2.0"
         },
         "jsonschema": {
@@ -305,7 +292,6 @@
                 "sha256:0a451c9b295e4db772bdd8d06f2f1eb31caeec0e81fbb77ba37d4a3024e3b315",
                 "sha256:aa1f9496ab3abe72da4efe0daab0cb2233997914581f9a071e07498c6add8ed3"
             ],
-            "markers": "python_version >= '3.6'",
             "version": "==4.7.0"
         },
         "lazy-object-proxy": {
@@ -332,7 +318,6 @@
                 "sha256:efa1909120ce98bbb3777e8b6f92237f5d5c8ea6758efea36a473e1d38f7d3e4",
                 "sha256:f3900e8a5de27447acbf900b4750b0ddfd7ec1ea7fbaf11dfa911141bc522af0"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==1.4.3"
         },
         "mccabe": {
@@ -347,7 +332,6 @@
                 "sha256:aa9450c16d29286dc69b92ea4913c1bffe86488f90184445996ccc03a2f60382",
                 "sha256:f545b22138865bfbcc6b1ffe89ed5a2b8e2dc5d4fe876f2ca60d8e6f702a30f8"
             ],
-            "markers": "python_version >= '3.5'",
             "version": "==5.0.8"
         },
         "networkx": {
@@ -379,7 +363,6 @@
                 "sha256:fa38ac15dbf161ab1e941ff4ce39abd64b53fec5ddf60c23290daed2bc7d1157",
                 "sha256:fbcac492cb082fa38d88587d75feb90785d05d7e12d4565cbf1ecc727aff71b7"
             ],
-            "markers": "python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==5.7.3"
         },
         "pulp": {
@@ -394,7 +377,6 @@
                 "sha256:2295e7b2f6b5bd100585ebcb1f616591b652db8a741695b3d8f5d28bdc934367",
                 "sha256:c58a7d2815e0e8d7972bf1803331fb0152f867bd89adf8a01dfd55085434192e"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==2.6.0"
         },
         "pyflakes": {
@@ -402,7 +384,6 @@
                 "sha256:0d94e0e05a19e57a99444b6ddcf9a6eb2e5c68d3ca1e98e90707af8152c90a92",
                 "sha256:35b2d75ee967ea93b55750aa9edbbf72813e06a66ba54438df2cfac9e3c27fc8"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==2.2.0"
         },
         "pylint": {
@@ -415,17 +396,15 @@
         },
         "pyparsing": {
             "hashes": [
-                "sha256:c203ec8783bf771a155b207279b9bccb8dea02d8f0c9e5f8ead507bc3246ecc1",
-                "sha256:ef9d7589ef3c200abe66653d3f1ab1033c3c419ae9b9bdb1240a85b024efc88b"
+                "sha256:13140e8d0e1edd806eb50f18535d77f2143b40771d4aaef6b4950dd93d48a7db",
+                "sha256:38891c1032d0c759f0fa5ed3a8f249fd992b083fa2303ead58ee48a51b269e02"
             ],
-            "markers": "python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2, 3.3'",
-            "version": "==2.4.7"
+            "version": "==3.0.0b1"
         },
         "pyrsistent": {
             "hashes": [
                 "sha256:2e636185d9eb976a18a8a8e96efce62f2905fea90041958d8cc2a189756ebf3e"
             ],
-            "markers": "python_version >= '3.5'",
             "version": "==0.17.3"
         },
         "python-dateutil": {
@@ -433,7 +412,6 @@
                 "sha256:73ebfe9dbf22e832286dafa60473e4cd239f8592f699aa5adaf10050e6e1823c",
                 "sha256:75bb3f31ea686f1197762692a9ee6a7550b59fc6ca3a1f4b5d7e32fb98e2da2a"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==2.8.1"
         },
         "pyyaml": {
@@ -513,7 +491,6 @@
                 "sha256:7f1a0b932f4a60a1a65caa4263921bb7d9ee911957e0ae4a23a6dd08185ad5f8",
                 "sha256:e786fa28d8c9154e6a4de5d46a1d921b8749f8b74e28bde23768e5e16eece998"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4'",
             "version": "==2.25.0"
         },
         "s3transfer": {
@@ -528,7 +505,6 @@
                 "sha256:30639c035cdb23534cd4aa2dd52c3bf48f06e5f4a941509c8bafd8ce11080259",
                 "sha256:8b74bedcbbbaca38ff6d7491d76f2b06b3592611af620f8426e82dddb04a5ced"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==1.15.0"
         },
         "smmap": {
@@ -536,7 +512,6 @@
                 "sha256:54c44c197c819d5ef1991799a7e30b662d1e520f2ac75c9efbeb54a742214cf4",
                 "sha256:9c98bbd1f9786d22f14b3d4126894d56befb835ec90cef151af566c7e19b5d24"
             ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==3.0.4"
         },
         "snakefmt": {
@@ -549,17 +524,16 @@
         },
         "snakemake": {
             "hashes": [
-                "sha256:47417307d08ecb0707b3b29effc933bd63d8c8e3ab15509c62b685b7614c6568"
+                "sha256:edaed8bca9478e0393106e817a576260a1bed5e8b3bfa55e1706ef0efcffd6f6"
             ],
             "index": "pypi",
-            "version": "==5.29.0"
+            "version": "==5.30.1"
         },
         "toml": {
             "hashes": [
                 "sha256:806143ae5bfb6a3c6e736a764057db0e6a0e05e338b5630894a5f779cabb4f9b",
                 "sha256:b3bda1d108d5dd99f4a20d24d9c348e91c4db7ab1b749200bded2f839ccbe68f"
             ],
-            "markers": "python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2, 3.3'",
             "version": "==0.10.2"
         },
         "toposort": {
@@ -574,7 +548,6 @@
                 "sha256:178f4ce988f69189f7e523337a3e11d91c786ded9360174a3d9ca83e79bc5396",
                 "sha256:69ff3f9d5351f31a7ad80443c2674b7099df13cc41fc5fa6e2f6d3b0330b0426"
             ],
-            "markers": "python_version >= '3.7'",
             "version": "==5.0.5"
         },
         "typed-ast": {
@@ -663,7 +636,6 @@
                 "sha256:102c24ef8f171fd729d46599845e95c7ab894a4cf45f5de11a44cc7444fb1108",
                 "sha256:ed5eee1974372595f9e416cc7bbeeb12335201d8081ca8a0743c954d4446e5cb"
             ],
-            "markers": "python_version >= '3.6'",
             "version": "==3.4.0"
         }
     },