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Fix Snakefile regex

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kpj 2020-09-24 15:55:47 +02:00
parent 71ede6ccca
commit 40f995365b
1 changed files with 2 additions and 2 deletions
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4
lib/linter.sh
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@ -1938,7 +1938,7 @@ if [ "${VALIDATE_SNAKEMAKE_LINT}" == "true" ]; then
# Lint the files with snakefmt # # Lint the files with snakefmt #
################################ ################################
# LintCodebase "FILE_TYPE" "LINTER_NAME" "LINTER_CMD" "FILE_TYPES_REGEX" "FILTER_REGEX_INCLUDE" "FILTER_REGEX_EXCLUDE" "FILE_ARRAY" # LintCodebase "FILE_TYPE" "LINTER_NAME" "LINTER_CMD" "FILE_TYPES_REGEX" "FILTER_REGEX_INCLUDE" "FILTER_REGEX_EXCLUDE" "FILE_ARRAY"
LintCodebase "SNAKEMAKE_LINT" "snakemake" "snakemake --lint -s" "\(Snakefile|.*\.smk\)\$" "${FILTER_REGEX_INCLUDE}" "${FILTER_REGEX_EXCLUDE}" "${FILE_ARRAY_SNAKEMAKE[@]}" LintCodebase "SNAKEMAKE_LINT" "snakemake" "snakemake --lint -s" ".*\(Snakefile\|\.smk\)\$" "${FILTER_REGEX_INCLUDE}" "${FILTER_REGEX_EXCLUDE}" "${FILE_ARRAY_SNAKEMAKE[@]}"
fi fi
@ -1950,7 +1950,7 @@ if [ "${VALIDATE_SNAKEMAKE_SNAKEFMT}" == "true" ]; then
# Lint the files with snakefmt # # Lint the files with snakefmt #
################################ ################################
# LintCodebase "FILE_TYPE" "LINTER_NAME" "LINTER_CMD" "FILE_TYPES_REGEX" "FILTER_REGEX_INCLUDE" "FILTER_REGEX_EXCLUDE" "FILE_ARRAY" # LintCodebase "FILE_TYPE" "LINTER_NAME" "LINTER_CMD" "FILE_TYPES_REGEX" "FILTER_REGEX_INCLUDE" "FILTER_REGEX_EXCLUDE" "FILE_ARRAY"
LintCodebase "SNAKEMAKE_SNAKEFMT" "snakefmt" "snakefmt --config ${SNAKEMAKE_SNAKEFMT_LINTER_RULES} --check --compact-diff" "\(Snakefile|.*\.smk\)\$" "${FILTER_REGEX_INCLUDE}" "${FILTER_REGEX_EXCLUDE}" "${FILE_ARRAY_SNAKEMAKE[@]}" LintCodebase "SNAKEMAKE_SNAKEFMT" "snakefmt" "snakefmt --config ${SNAKEMAKE_SNAKEFMT_LINTER_RULES} --check --compact-diff" ".*\(Snakefile\|\.smk\)\$" "${FILTER_REGEX_INCLUDE}" "${FILTER_REGEX_EXCLUDE}" "${FILE_ARRAY_SNAKEMAKE[@]}"
fi fi
###################### ######################