Zack Koppert
0e6e3dc908
Remove release drafter and add action.yml step ( #1172 )
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Co-authored-by: Lukas Gravley <admiralawkbar@github.com>
2021-02-19 09:09:37 -06:00
dependabot[bot]
8354b3f49b
Bump actions/stale from v3.0.16 to v3.0.17 ( #1234 )
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Bumps [actions/stale](https://github.com/actions/stale ) from v3.0.16 to v3.0.17.
- [Release notes](https://github.com/actions/stale/releases )
- [Commits](https://github.com/actions/stale/compare/v3.0.16...996798eb71ef485dc4c7b4d3285842d714040c4a )
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-02-18 23:52:29 -08:00
Zack Koppert
35e2d160a4
Add trivy scans for container security ( #1209 )
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* Create trivy.yml
* Add descriptive names
* Add fs mode to catch package.lock issues
* use script to get around timeout
* use script to get around timeout
* set it
* set it
* update deps
* Align with comment style
* fix headeer
* npm audit fix to patch vulnerabilities
Signed-off-by: Zack Koppert <zkoppert@github.com>
Co-authored-by: Lukas Gravley <admiralawkbar@github.com>
2021-02-17 16:03:30 -06:00
dependabot[bot]
2e8c31622a
Bump actions/stale from v3.0.15 to v3.0.16 ( #1189 )
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Bumps [actions/stale](https://github.com/actions/stale ) from v3.0.15 to v3.0.16.
- [Release notes](https://github.com/actions/stale/releases )
- [Commits](https://github.com/actions/stale/compare/v3.0.15...9d6f46564a515a9ea11e7762ab3957ee58ca50da )
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Lukas Gravley <admiralawkbar@github.com>
2021-02-17 12:17:42 -06:00
Lukas Gravley
974ab62ea1
fix actions ( #1222 )
2021-02-17 09:54:21 -06:00
Jeremiah
00c70f4b2c
Update snakefmt to 0.3.0 and black to 20.3 (now supported by snakefmt). ( #1212 )
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* Update snakefmt to 0.3.0 and black to 20.3 (now suppored by snakefmt).
* Update pipfile for ansible 5.0
* Align pipfile python with Docker alpine image
* Explicitly pin python minor version in dockerfile
* Ansible updates
* Add missing cryptography dependencies
* Eliminate deprecated ansible syntax
* Update expected output for ansible
* Try to add regex to handle test run length
* Yaml doc syntax fixes
* Flailing attempt at tap wildcard
* Catch dynamic output from ansible-lint
* Update regex
* Fix regex statement
* Fix tap output
* Update go error message (issue from master branch)
* Fix regex
* Ansible strikes back
* Fix tap output
* Fix json tap
* Update r tap
2021-02-17 07:32:40 -06:00
Zack Koppert
6602bf49f9
Delete codeql-analysis.yml
2021-02-12 21:28:14 -08:00
Zack Koppert
732574b1b2
Add code scanning
2021-02-12 21:25:25 -08:00
JonZeolla
7c36dcdc1a
Fix the default hadolint rule name in the documentation ( #1179 )
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* Fix default hadolint rule name
* Rename github actions hadolint config in line with the default
2021-02-03 09:13:02 -06:00
dependabot[bot]
1df69f651f
Bump yoheimuta/protolint from v0.28.0 to v0.28.1 ( #1169 )
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* Bump yoheimuta/protolint from v0.28.0 to v0.28.1
Bumps yoheimuta/protolint from v0.28.0 to v0.28.1.
Signed-off-by: dependabot[bot] <support@github.com>
* maybe
* maybe
* use better docker
* use better docker
* use better docker
* use better docker
* use better docker
* use better docker
* fixed it
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Admiral Awkbar <admiralawkbar@github.com>
2021-02-03 09:08:08 -06:00
Zack Koppert
f7482feec2
move back to latest for linting this repo
2021-01-29 22:35:36 -08:00
Zack Koppert
93e067cf82
revert to get order of operations right
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this enables an automated deploy. will reroll in a minute to 3.14.5
2021-01-29 21:14:18 -08:00
Zack Koppert
469e002c2e
testing versioning ( #1171 )
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* Synchronize versions for upcoming release potentially addressing #490
2021-01-29 21:06:59 -08:00
Marco Ferrari
ab8780a58f
Install, configure, and run jscpd. Add missing tests ( #1032 )
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Co-authored-by: Gabo <gabo.fdc@gmail.com>
Co-authored-by: Matt Desmond <beardofedu@github.com>
Co-authored-by: Lukas Gravley <admiralawkbar@github.com>
2021-01-27 20:47:34 +01:00
dependabot[bot]
b50d9ee298
Bump actions/stale from v3.0.14 to v3.0.15 ( #1159 )
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Bumps [actions/stale](https://github.com/actions/stale ) from v3.0.14 to v3.0.15.
- [Release notes](https://github.com/actions/stale/releases )
- [Commits](https://github.com/actions/stale/compare/v3.0.14...86561461b92875de77a8b2d2e75f004c826e8f45 )
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Lukas Gravley <admiralawkbar@github.com>
2021-01-25 09:29:09 -06:00
Admiralawkbar
aa7273e80f
fix order
2020-12-04 18:06:17 -06:00
Admiralawkbar
92697323c5
fix docker
2020-12-04 17:32:48 -06:00
Admiralawkbar
5c89819243
fix docker
2020-12-04 17:31:42 -06:00
Lukas Gravley
682cef3a47
Better deploy ( #1060 )
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* much better
* kill spaces
* friday typos
2020-12-04 17:21:08 -06:00
Lukas Gravley
848d9d911d
much better ( #1059 )
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* much better
* kill spaces
2020-12-04 17:15:51 -06:00
Lukas Gravley
37b098dff5
Try to build with caching to help build times ( #1051 )
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* trying this out
* adding auth
* adding more tags
* check log
* try2
* fix vars
* remove debug
* fix tap
* Revert "fix tap"
This reverts commit 3e1fa4c704
2020-12-04 12:49:09 -06:00
Thad Craft
32b3cde716
Enable @SuppressWarnings annotation support by default for Java ( #1052 )
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* Enable @SuppressWarnings annotation support by default for Java checkstyle
* Ensure that args is used
* Add updates to the sun_checks in .github/linters
* Comment out Javadoc linter to remove need for package-info
* Fix expected-JAVA.tap to match new test cases
* Fix expected-JAVA.tap to match output
Co-authored-by: Lukas Gravley <admiralawkbar@github.com>
2020-12-04 08:46:42 -06:00
Lukas Gravley
6f1a131b14
fixing logic for file find ( #1049 )
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* fixing logic
* fix warn error
* fix files
* maybe?
* fix test name
* fix test
2020-12-03 16:17:55 -06:00
Gabriel Diaz
981de6bcfa
Update CODEOWNERS ( #1036 )
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* Update CODEOWNERS
Add @ferrarimarco as codeowner
* kill space
Co-authored-by: Lukas Gravley <admiralawkbar@github.com>
2020-11-30 11:15:52 -06:00
dependabot[bot]
0246dc5215
Bump actions/stale from v3.0.13 to v3.0.14 ( #1025 )
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Bumps [actions/stale](https://github.com/actions/stale ) from v3.0.13 to v3.0.14.
- [Release notes](https://github.com/actions/stale/releases )
- [Commits](https://github.com/actions/stale/compare/v3.0.13...87c2b794b9b47a9bec68ae03c01aeb572ffebdb1 )
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Lukas Gravley <admiralawkbar@github.com>
2020-11-23 09:06:53 -06:00
Marco Ferrari
241f9f2cad
Harden testing ( #982 )
2020-11-20 09:12:31 -06:00
Lukas Gravley
20c5d593b1
fixThatEcho ( #1002 )
2020-11-16 10:25:04 -06:00
Marco Ferrari
7862654394
Fix editorconfig-checker errors
2020-11-05 23:21:41 +01:00
Lukas Gravley
209f8bcb7f
Merge pull request #956 from github/update-issue-template-bug
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Update bug issue template with logging instructions
2020-11-04 09:59:46 -06:00
Marco Ferrari
c01d0bc870
Update bug issue template with logging instructions
2020-11-04 14:33:42 +01:00
dependabot[bot]
134c891be0
Bump actions/checkout from v2.3.3 to v2.3.4
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Bumps [actions/checkout](https://github.com/actions/checkout ) from v2.3.3 to v2.3.4.
- [Release notes](https://github.com/actions/checkout/releases )
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md )
- [Commits](https://github.com/actions/checkout/compare/v2.3.3...5a4ac9002d0be2fb38bd78e4b4dbde5606d7042f )
Signed-off-by: dependabot[bot] <support@github.com>
2020-11-04 05:43:17 +00:00
dependabot[bot]
8c4f89ee26
Bump actions/stale from v3.0.12 to v3.0.13
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Bumps [actions/stale](https://github.com/actions/stale ) from v3.0.12 to v3.0.13.
- [Release notes](https://github.com/actions/stale/releases )
- [Commits](https://github.com/actions/stale/compare/v3.0.12...af4072615903a8b031f986d25b1ae3bf45ec44d4 )
Signed-off-by: dependabot[bot] <support@github.com>
2020-11-03 05:45:43 +00:00
Marco Ferrari
fcce194d34
Merge TestCodebase and LintCodebase
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Change-Id: I9a044fefe96e400b8e3320842b53fe97af2a7b40
2020-10-17 16:12:55 +02:00
Marco Ferrari
ad1a2a5877
Enable debug output during CI
2020-10-15 16:45:18 +02:00
Lukas Gravley
6eaa2a8da0
Merge pull request #828 from dec5e/full-checkout
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Fetch full git history to get a proper list of changed files within super-linter
2020-10-12 10:19:06 -05:00
dependabot[bot]
76eac0a124
Bump actions/stale from v3.0.11 to v3.0.12
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Bumps [actions/stale](https://github.com/actions/stale ) from v3.0.11 to v3.0.12.
- [Release notes](https://github.com/actions/stale/releases )
- [Commits](https://github.com/actions/stale/compare/v3.0.11...44f9eae0adddf72dbf3eedfacc999f70afcec1a8 )
Signed-off-by: dependabot[bot] <support@github.com>
2020-10-12 06:18:42 +00:00
Andrei Artemov
56b32c3704
Fetch full git history to get a proper list of changed files within super-linter
2020-10-09 14:17:56 +03:00
Lucas Gravley
68d629d461
fix pip
2020-10-08 09:14:31 -05:00
Lucas Gravley
08c1113afc
fix it
2020-10-08 09:11:26 -05:00
Lucas Gravley
2bec091dbb
adding rules
2020-10-08 09:05:32 -05:00
dependabot[bot]
55bdf97202
Bump actions/checkout from v2.3.2 to v2.3.3
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Bumps [actions/checkout](https://github.com/actions/checkout ) from v2.3.2 to v2.3.3.
- [Release notes](https://github.com/actions/checkout/releases )
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md )
- [Commits](https://github.com/actions/checkout/compare/v2.3.2...a81bbbf8298c0fa03ea29cdc473d45769f953675 )
Signed-off-by: dependabot[bot] <support@github.com>
2020-09-24 05:42:06 +00:00
Marco Ferrari
f24f52be11
Lint with Kubeval and fixes
2020-09-22 01:49:01 +02:00
dependabot[bot]
420a7c4b09
Bump actions/stale from v3.0.10 to v3.0.11
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Bumps [actions/stale](https://github.com/actions/stale ) from v3.0.10 to v3.0.11.
- [Release notes](https://github.com/actions/stale/releases )
- [Commits](https://github.com/actions/stale/compare/v3.0.10...1849651e2aa1b1d6d2cba4c90c719f4b6c929a28 )
Signed-off-by: dependabot[bot] <support@github.com>
2020-09-14 05:43:25 +00:00
kpj
1e453be7fa
[Snakemake] Update codebase
2020-09-07 16:49:07 +02:00
Goryudyuma(Kei.Matsumoto)
a2b751d503
Update pull_request-template.md
2020-09-05 03:32:19 +09:00
Lukas Gravley
fc938bdc0b
Merge pull request #674 from leviem1/use-ghcr
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Move to GitHub Container Registry
2020-09-04 12:23:35 -05:00
Lucas Gravley
9d2624c0e1
Adding more
2020-09-04 10:54:31 -05:00
Lucas Gravley
cd74d80762
adding some cleanup
2020-09-04 09:52:04 -05:00
Victor Martinez
7380bad950
Validate docker labels in the DEV workflow
2020-09-04 10:26:13 +01:00
Thulio Ferraz Assis
2d259418a7
fix: comment typo for GH Container Registry
2020-09-02 11:11:56 -05:00
Josselin
f34b084586
Add support for black config file
2020-09-02 11:28:57 +02:00
Lucas Gravley
e1c5ac81cf
fixed dumb bug
2020-08-24 12:09:00 -05:00
dependabot[bot]
7017c233c9
Bump actions/github-script from v2 to v3
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Bumps [actions/github-script](https://github.com/actions/github-script ) from v2 to v3.
- [Release notes](https://github.com/actions/github-script/releases )
- [Commits](https://github.com/actions/github-script/compare/v2...626af12fe9a53dc2972b48385e7fe7dec79145c9 )
Signed-off-by: dependabot[bot] <support@github.com>
2020-08-24 05:47:32 +00:00
Lucas Gravley
a59f74a287
small cleanup
2020-08-20 13:18:17 -05:00
Lucas Gravley
17a4bd2271
adding some dope code
2020-08-20 12:58:11 -05:00
Lukas Gravley
5970f28f6b
Merge pull request #588 from assignUser/chktex
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Add LaTeX support
2020-08-19 13:12:11 -05:00
assignUser
8224e9e6e5
fix exit code
2020-08-19 17:51:07 +00:00
assignUser
e1bc1df9e7
add latex support
2020-08-18 22:54:32 +00:00
Lukas Gravley
308c1fd5aa
Merge pull request #569 from assignUser/master
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Add lintr support to super-lint
2020-08-18 16:08:35 -05:00
Lukas Gravley
173294201d
Update CODEOWNERS
2020-08-18 08:51:15 -05:00
Lukas Gravley
931eba8a10
Update CODEOWNERS
2020-08-17 12:42:15 -05:00
Lucas Gravley
2a272a5925
adding more logic
2020-08-17 09:09:05 -05:00
assignUser
0f47f68445
add .lintr detection
2020-08-17 12:01:25 +00:00
assignUser
f6fcfb7922
adjust .lintr
2020-08-16 00:20:06 +00:00
assignUser
d4f4bbd255
everything except linter.sh
2020-08-15 18:21:57 +00:00
dependabot[bot]
02cec94759
Bump actions/stale from v3.0.9 to v3.0.10
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Bumps [actions/stale](https://github.com/actions/stale ) from v3.0.9 to v3.0.10.
- [Release notes](https://github.com/actions/stale/releases )
- [Commits](https://github.com/actions/stale/compare/v3.0.9...e976731ae824d9e0165ade8f9e2e8f1743b2fc09 )
Signed-off-by: dependabot[bot] <support@github.com>
2020-08-12 05:30:00 +00:00
Lucas Gravley
fb791083fb
fix config
2020-08-11 13:40:38 -05:00
Lucas Gravley
9856082087
add sql goods
2020-08-11 12:30:00 -05:00
Lucas Gravley
c3953b792c
adding better logics
2020-08-11 08:09:57 -05:00
Barry
d03cfd78aa
Finish sentence
2020-08-11 00:04:35 +01:00
Barry
fe72e27641
Only run deploy to Docker on original repo and not forks
2020-08-10 23:55:52 +01:00
Lukas Gravley
cfb9cf66e3
Merge pull request #546 from github/FixMerge
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Fixing Actions job name
2020-08-10 12:06:37 -05:00
Lucas Gravley
5e7052202c
fix name
2020-08-10 10:44:39 -05:00
dependabot[bot]
6da5e0756a
Bump actions/checkout from v2.3.1 to v2.3.2
...
Bumps [actions/checkout](https://github.com/actions/checkout ) from v2.3.1 to v2.3.2.
- [Release notes](https://github.com/actions/checkout/releases )
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md )
- [Commits](https://github.com/actions/checkout/compare/v2.3.1...2036a08e25fa78bbd946711a407b529a0a1204bf )
Signed-off-by: dependabot[bot] <support@github.com>
2020-08-10 05:38:32 +00:00
Lukas Gravley
1746012dab
Merge pull request #534 from marghidanu/master
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PerlCritic basic implementation
2020-08-07 11:56:09 -05:00
Tudor Marghidanu
523b14a2df
PerlCritic basic implementation
2020-08-07 14:58:40 +02:00
Lucas Gravley
4241daf621
fixed bad var
2020-08-06 14:31:58 -05:00
Lucas Gravley
6701372154
so dank
2020-08-06 13:16:23 -05:00
Lucas Gravley
5ffa5518db
fixed it real good
2020-08-06 10:56:06 -05:00
Lukas Gravley
4973e1bd1c
Merge pull request #459 from quackduck/quackduck-pr
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Work on adding Java
2020-08-06 09:25:52 -05:00
Thomas Hughes
59badeabdd
fix xml check, add javadoc
2020-08-05 16:50:12 -05:00
Lucas Gravley
a216a6623a
adding some good code
2020-08-05 13:35:14 -05:00
Lukas Gravley
c311a231e4
Update CODEOWNERS
2020-08-05 13:07:43 -05:00
Lukas Gravley
d1908149ac
Update CODEOWNERS
2020-08-05 13:07:12 -05:00
Lukas Gravley
ffcfaa3cd4
Update CODEOWNERS
2020-08-05 13:06:14 -05:00
Zack Koppert
9d7d3425c0
Separate maintainer and contributor jobs
2020-08-05 10:24:47 -07:00
Lukas Gravley
63e3cce26e
adding nice stuff
2020-08-05 11:50:59 -05:00
Lukas Gravley
ec7f7ca450
adding dependabot
2020-08-05 11:45:55 -05:00
Lucas Gravley
a457364fce
now with matching names
2020-08-04 15:03:18 -05:00
Lucas Gravley
f5ecd52d79
eat our own dogfood
2020-08-04 14:51:00 -05:00
Lukas Gravley
3d55ba70f3
Update automerge-dependabot.yml
2020-08-04 11:05:11 -05:00
Lukas Gravley
f2ddc9489f
no token needed
2020-08-04 08:35:04 -05:00
Lucas Gravley
6fcc297102
fix default token
2020-08-03 08:12:14 -05:00
Gabo
675b42880e
Add glake8 to .github/linters
2020-07-27 17:51:02 -05:00
Lukas Gravley
85209cfb5d
Merge pull request #476 from github/lua
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add lua/luacheck to super-linter
2020-07-27 12:13:39 -05:00
dependabot[bot]
a8802c1fa6
Bump actions/stale from v3.0.8 to v3.0.9
...
Bumps [actions/stale](https://github.com/actions/stale ) from v3.0.8 to v3.0.9.
- [Release notes](https://github.com/actions/stale/releases )
- [Commits](https://github.com/actions/stale/compare/v3.0.8...1e5e734da7bd7ea04daf52d9f1c6540e83867b73 )
Signed-off-by: dependabot[bot] <support@github.com>
2020-07-27 05:43:15 +00:00
Casey Vega
5fa6aca5c2
add lua to super-linter
2020-07-24 11:34:52 -07:00
Lukas Gravley
40dc32f670
Merge branch 'master' into Groovy
2020-07-22 11:44:20 -05:00
Lucas Gravley
aa84744c86
Merge branch 'master' into state-braces
2020-07-22 08:07:18 -05:00
dependabot[bot]
1870af5c5f
Update actions/github-script requirement to v2
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Updates the requirements on [actions/github-script](https://github.com/actions/github-script ) to permit the latest version.
- [Release notes](https://github.com/actions/github-script/releases )
- [Commits](6e5ee1dc1c
2020-07-22 06:07:25 +00:00
