github-actions[bot]
dfad0c8b83
Update Python dependencies ( #3000 )
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Co-authored-by: Super-Linter Automation <noreply@github.com>
2022-06-06 08:12:54 -05:00
dependabot[bot]
adba928f1f
Bump snakemake from 7.8.0 to 7.8.1 in /dependencies/python ( #2991 )
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Bumps [snakemake](https://github.com/snakemake/snakemake ) from 7.8.0 to 7.8.1.
- [Release notes](https://github.com/snakemake/snakemake/releases )
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md )
- [Commits](https://github.com/snakemake/snakemake/compare/v7.8.0...v7.8.1 )
---
updated-dependencies:
- dependency-name: snakemake
dependency-type: direct:production
update-type: version-update:semver-patch
...
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2022-05-31 13:09:56 -05:00
github-actions[bot]
d152bd07a3
Update Python dependencies ( #2966 )
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Co-authored-by: Super-Linter Automation <noreply@github.com>
2022-05-31 08:29:24 -05:00
github-actions[bot]
0faf83234e
Weekly Python Updates ( #2922 )
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* Update Python dependencies
* fix it
Co-authored-by: Super-Linter Automation <noreply@github.com>
Co-authored-by: Admiral Awkbar <admiralawkbar@github.com>
2022-05-23 13:26:07 -05:00
github-actions[bot]
f26cfb25dc
Update Python dependencies ( #2895 )
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Co-authored-by: Super-Linter Automation <noreply@github.com>
2022-05-16 12:55:12 -05:00
Super-Linter Automation
1f1e382781
Update Python dependencies
2022-05-09 01:38:28 -04:00
dependabot[bot]
4c791239f9
Bump wrapt from 1.14.0 to 1.14.1 in /dependencies/python ( #2867 )
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Bumps [wrapt](https://github.com/GrahamDumpleton/wrapt ) from 1.14.0 to 1.14.1.
- [Release notes](https://github.com/GrahamDumpleton/wrapt/releases )
- [Changelog](https://github.com/GrahamDumpleton/wrapt/blob/develop/docs/changes.rst )
- [Commits](https://github.com/GrahamDumpleton/wrapt/compare/1.14.0...1.14.1 )
---
updated-dependencies:
- dependency-name: wrapt
dependency-type: direct:production
update-type: version-update:semver-patch
...
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2022-05-02 10:40:16 -05:00
github-actions[bot]
651cff3720
Update Python dependencies ( #2852 )
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Co-authored-by: Super-Linter Automation <noreply@github.com>
2022-05-02 09:22:46 -05:00
dependabot[bot]
c5c1f15247
Bump jupyter-core from 4.9.2 to 4.10.0 in /dependencies/python ( #2804 )
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Bumps [jupyter-core](https://github.com/jupyter/jupyter_core ) from 4.9.2 to 4.10.0.
- [Release notes](https://github.com/jupyter/jupyter_core/releases )
- [Changelog](https://github.com/jupyter/jupyter_core/blob/main/docs/changelog.rst )
- [Commits](https://github.com/jupyter/jupyter_core/compare/4.9.2...4.10.0 )
---
updated-dependencies:
- dependency-name: jupyter-core
dependency-type: direct:production
update-type: version-update:semver-minor
...
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2022-04-20 11:11:16 -07:00
github-actions[bot]
8a14c40fe8
Update Python dependencies ( #2788 )
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Co-authored-by: Super-Linter Automation <noreply@github.com>
2022-04-19 10:00:30 -07:00
dependabot[bot]
1b0a2965ad
Bump yte from 1.2.0 to 1.2.1 in /dependencies/python ( #2775 )
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Bumps [yte](https://github.com/koesterlab/yte ) from 1.2.0 to 1.2.1.
- [Release notes](https://github.com/koesterlab/yte/releases )
- [Changelog](https://github.com/koesterlab/yte/blob/main/CHANGELOG.md )
- [Commits](https://github.com/koesterlab/yte/compare/v1.2.0...v1.2.1 )
---
updated-dependencies:
- dependency-name: yte
dependency-type: direct:production
update-type: version-update:semver-patch
...
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2022-04-11 12:55:49 -05:00
Super-Linter Automation
401a175228
Update Python dependencies
2022-04-04 09:32:17 -04:00
Super-Linter Automation
9f875389ff
Update Python dependencies
2022-03-28 09:35:32 -04:00
github-actions[bot]
2bcdb3d248
Update Python dependencies ( #2644 )
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Co-authored-by: Super-Linter Automation <noreply@github.com>
2022-03-21 13:09:41 -05:00
dependabot[bot]
6abfa2b339
Bump snakemake from 7.1.0 to 7.2.1 in /dependencies/python ( #2637 )
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Bumps [snakemake](https://github.com/snakemake/snakemake ) from 7.1.0 to 7.2.1.
- [Release notes](https://github.com/snakemake/snakemake/releases )
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md )
- [Commits](https://github.com/snakemake/snakemake/compare/v7.1.0...v7.2.1 )
---
updated-dependencies:
- dependency-name: snakemake
dependency-type: direct:production
update-type: version-update:semver-minor
...
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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-03-14 10:48:30 -05:00
github-actions[bot]
07b2cc9eab
Update Python dependencies ( #2616 )
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Co-authored-by: Super-Linter Automation <noreply@github.com>
2022-03-14 08:54:52 -05:00
Super-Linter Automation
71957137ef
Update Python dependencies
2022-03-07 10:32:23 -05:00
Super-Linter Automation
27aa4a2bb5
Update Python dependencies
2022-03-01 10:52:09 -05:00
Super-Linter Automation
3403d67934
Update Python dependencies
2022-02-28 09:27:26 -05:00
github-actions[bot]
069df12b17
Update Python dependencies ( #2546 )
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Co-authored-by: Super-Linter Automation <noreply@github.com>
2022-02-22 11:21:32 -06:00
dependabot[bot]
8a022dcb7a
Bump jupyter-core from 4.9.1 to 4.9.2 in /dependencies/python ( #2530 )
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Bumps [jupyter-core](https://jupyter.org ) from 4.9.1 to 4.9.2.
---
updated-dependencies:
- dependency-name: jupyter-core
dependency-type: direct:production
update-type: version-update:semver-patch
...
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2022-02-22 08:58:02 -06:00
dependabot[bot]
524c99f161
Bump gitpython from 3.1.26 to 3.1.27 in /dependencies/python ( #2532 )
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Bumps [gitpython](https://github.com/gitpython-developers/GitPython ) from 3.1.26 to 3.1.27.
- [Release notes](https://github.com/gitpython-developers/GitPython/releases )
- [Changelog](https://github.com/gitpython-developers/GitPython/blob/main/CHANGES )
- [Commits](https://github.com/gitpython-developers/GitPython/compare/3.1.26...3.1.27 )
---
updated-dependencies:
- dependency-name: gitpython
dependency-type: direct:production
update-type: version-update:semver-patch
...
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2022-02-22 08:57:48 -06:00
Brett Logan
892e5ab2ec
Update deps
2022-02-14 13:39:05 -05:00
dependabot[bot]
aeaca1dfae
Bump snakemake from 6.12.3 to 6.13.1 in /dependencies/python ( #2380 )
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Bumps [snakemake](https://github.com/snakemake/snakemake ) from 6.12.3 to 6.13.1.
- [Release notes](https://github.com/snakemake/snakemake/releases )
- [Commits](https://github.com/snakemake/snakemake/compare/v6.12.3...v6.13.1 )
---
updated-dependencies:
- dependency-name: snakemake
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-01-24 09:11:39 -06:00
dependabot[bot]
aed5376439
Bump gitpython from 3.1.24 to 3.1.26 in /dependencies/python ( #2351 )
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Bumps [gitpython](https://github.com/gitpython-developers/GitPython ) from 3.1.24 to 3.1.26.
- [Release notes](https://github.com/gitpython-developers/GitPython/releases )
- [Changelog](https://github.com/gitpython-developers/GitPython/blob/main/CHANGES )
- [Commits](https://github.com/gitpython-developers/GitPython/compare/3.1.24...3.1.26 )
---
updated-dependencies:
- dependency-name: gitpython
dependency-type: direct:production
update-type: version-update:semver-patch
...
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2022-01-18 13:57:10 -06:00
dependabot[bot]
0651230a6e
Bump pyrsistent from 0.18.0 to 0.18.1 in /dependencies/python
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Bumps [pyrsistent](https://github.com/tobgu/pyrsistent ) from 0.18.0 to 0.18.1.
- [Release notes](https://github.com/tobgu/pyrsistent/releases )
- [Changelog](https://github.com/tobgu/pyrsistent/blob/master/CHANGES.txt )
- [Commits](https://github.com/tobgu/pyrsistent/compare/v0.18.0...v0.18.1 )
---
updated-dependencies:
- dependency-name: pyrsistent
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
2022-01-18 14:08:52 -05:00
dependabot[bot]
53ad488764
Bump urllib3 from 1.26.7 to 1.26.8 in /dependencies/python ( #2334 )
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Bumps [urllib3](https://github.com/urllib3/urllib3 ) from 1.26.7 to 1.26.8.
- [Release notes](https://github.com/urllib3/urllib3/releases )
- [Changelog](https://github.com/urllib3/urllib3/blob/1.26.8/CHANGES.rst )
- [Commits](https://github.com/urllib3/urllib3/compare/1.26.7...1.26.8 )
---
updated-dependencies:
- dependency-name: urllib3
dependency-type: direct:production
update-type: version-update:semver-patch
...
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2022-01-11 12:01:58 -06:00
Jameel Al-Aziz
7e1683407d
Update Dependabot for python virtual envs
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* Simplify virtualenv installation to use multiple requirements files in
a single directory. This eliminates the packages.txt file and provides
an easier path to adding new tools in the future. It also allows us to
simplify the dependenabot configuration as all requirements files are
in a single directory.
* Update dependabot.yml to point to the new Python dependencies folder.
2022-01-11 10:05:56 -05:00
