actions/lint
1
0
Fork 0
mirror of https://github.com/super-linter/super-linter.git synced 2024-11-21 21:50:59 -05:00
Code Issues Projects Releases Packages Wiki Activity Actions 1

[Snakemake] Also lint 'Snakefile' (without '.smk' suffix)

Browse source
This commit is contained in:
kpj 2020-09-08 09:11:54 +02:00
parent 53f551c8b0
commit ad262196ba
1 changed files with 1 additions and 1 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

2
lib/linter.sh
View file

@ -1858,7 +1858,7 @@ if [ "${VALIDATE_SNAKEMAKE}" == "true" ]; then
# Lint the files with snakefmt #
################################
# LintCodebase "FILE_TYPE" "LINTER_NAME" "LINTER_CMD" "FILE_TYPES_REGEX" "FILE_ARRAY"
LintCodebase "SNAKEMAKE" "snakefmt" "snakefmt --config ${SNAKEMAKE_LINTER_RULES} --diff" ".*\.\(smk\)\$" "${FILE_ARRAY_SNAKEMAKE[@]}"
LintCodebase "SNAKEMAKE" "snakefmt" "snakefmt --config ${SNAKEMAKE_LINTER_RULES} --diff" "\(Snakefile|.*\.smk\)\$" "${FILE_ARRAY_SNAKEMAKE[@]}"
fi
######################