Update Python dependencies

dependencies/python/ansible-lint.txt

@@ -1,31 +1,30 @@
-ansible-compat==2.2.7
-ansible-core==2.14.1
-ansible-lint==6.11.0
+ansible-core==2.14.4
+ansible-lint==6.14.4
 attrs==22.2.0
-black==22.12.0
+black==23.3.0
 bracex==2.3.post1
 cffi==1.15.1
 click==8.1.3
-cryptography==39.0.0
-filelock==3.9.0
+cryptography==40.0.1
+filelock==3.11.0
 Jinja2==3.1.2
 jsonschema==4.17.3
-markdown-it-py==2.1.0
+markdown-it-py==2.2.0
 MarkupSafe==2.1.2
 mdurl==0.1.2
-mypy-extensions==0.4.3
+mypy-extensions==1.0.0
 packaging==23.0
-pathspec==0.10.3
-platformdirs==2.6.2
+pathspec==0.11.1
+platformdirs==3.2.0
 pycparser==2.21
-Pygments==2.14.0
+Pygments==2.15.0
 pyrsistent==0.19.3
 PyYAML==6.0
 resolvelib==0.8.1
-rich==13.2.0
+rich==13.3.3
 ruamel.yaml==0.17.21
 ruamel.yaml.clib==0.2.7
 subprocess-tee==0.4.1
 tomli==2.0.1
 wcmatch==8.4.1
-yamllint==1.29.0
+yamllint==1.30.0

dependencies/python/black.txt

@@ -1,6 +1,7 @@
-black==22.12.0
+black==23.3.0
 click==8.1.3
-mypy-extensions==0.4.3
-pathspec==0.10.3
-platformdirs==2.6.2
+mypy-extensions==1.0.0
+packaging==23.0
+pathspec==0.11.1
+platformdirs==3.2.0
 tomli==2.0.1

dependencies/python/cfn-lint.txt

@@ -1,8 +1,8 @@
 attrs==22.2.0
-aws-sam-translator==1.57.0
-boto3==1.26.54
-botocore==1.29.54
-cfn-lint==0.72.9
+aws-sam-translator==1.64.0
+boto3==1.26.109
+botocore==1.29.109
+cfn-lint==0.77.0
 jmespath==1.0.1
 jschema-to-python==1.2.3
 jsonpatch==1.32
@@ -10,14 +10,17 @@ jsonpickle==3.0.1
 jsonpointer==2.3
 jsonschema==4.17.3
 junit-xml==1.9
-networkx==2.8.8
+mpmath==1.3.0
+networkx==3.1
 pbr==5.11.1
-pydantic==1.10.4
+pydantic==1.10.7
 pyrsistent==0.19.3
 python-dateutil==2.8.2
 PyYAML==6.0
+regex==2023.3.23
 s3transfer==0.6.0
 sarif-om==1.0.4
 six==1.16.0
-typing_extensions==4.4.0
-urllib3==1.26.14
+sympy==1.11.1
+typing_extensions==4.5.0
+urllib3==1.26.15

dependencies/python/isort.txt

@@ -1 +1 @@
-isort==5.11.4
+isort==5.12.0

dependencies/python/mypy.txt

@@ -1,4 +1,4 @@
-mypy==0.991
-mypy-extensions==0.4.3
+mypy==1.2.0
+mypy-extensions==1.0.0
 tomli==2.0.1
-typing_extensions==4.4.0
+typing_extensions==4.5.0

dependencies/python/pylint.txt

@@ -1,11 +1,11 @@
-astroid==2.13.3
+astroid==2.15.2
 dill==0.3.6
-isort==5.11.4
+isort==5.12.0
 lazy-object-proxy==1.9.0
 mccabe==0.7.0
-platformdirs==2.6.2
-pylint==2.15.10
+platformdirs==3.2.0
+pylint==2.17.2
 tomli==2.0.1
-tomlkit==0.11.6
-typing_extensions==4.4.0
-wrapt==1.14.1
+tomlkit==0.11.7
+typing_extensions==4.5.0
+wrapt==1.15.0

dependencies/python/snakefmt.txt

@@ -1,8 +1,9 @@
-black==22.12.0
+black==23.3.0
 click==8.1.3
-mypy-extensions==0.4.3
-pathspec==0.10.3
-platformdirs==2.6.2
-snakefmt==0.8.0
+mypy-extensions==1.0.0
+packaging==23.0
+pathspec==0.11.1
+platformdirs==3.2.0
+snakefmt==0.8.4
 toml==0.10.2
 tomli==2.0.1

dependencies/python/snakemake.txt

@@ -1,24 +1,24 @@
 appdirs==1.4.4
 attrs==22.2.0
 certifi==2022.12.7
-charset-normalizer==3.0.1
+charset-normalizer==3.1.0
 ConfigArgParse==1.5.3
 connection-pool==0.0.3
 datrie==0.8.2
 docutils==0.19
-dpath==2.1.4
-fastjsonschema==2.16.2
+dpath==2.1.5
+fastjsonschema==2.16.3
 gitdb==4.0.10
-GitPython==3.1.30
+GitPython==3.1.31
 humanfriendly==10.0
 idna==3.4
 Jinja2==3.1.2
 jsonschema==4.17.3
-jupyter_core==5.1.3
+jupyter_core==5.3.0
 MarkupSafe==2.1.2
-nbformat==5.7.3
+nbformat==5.8.0
 plac==1.3.5
-platformdirs==2.6.2
+platformdirs==3.2.0
 psutil==5.9.4
 PuLP==2.7.0
 pyrsistent==0.19.3
@@ -27,12 +27,12 @@ requests==2.28.2
 reretry==0.11.8
 smart-open==6.3.0
 smmap==5.0.0
-snakemake==7.20.0
+snakemake==7.25.0
 stopit==1.1.2
 tabulate==0.9.0
 throttler==1.2.2
-toposort==1.9
-traitlets==5.8.1
-urllib3==1.26.14
-wrapt==1.14.1
+toposort==1.10
+traitlets==5.9.0
+urllib3==1.26.15
+wrapt==1.15.0
 yte==1.5.1

dependencies/python/sqlfluff.txt

@@ -1,23 +1,22 @@
 appdirs==1.4.4
-attrs==22.2.0
 chardet==5.1.0
 click==8.1.3
 colorama==0.4.6
-diff-cover==7.3.2
-exceptiongroup==1.1.0
+diff-cover==7.5.0
+exceptiongroup==1.1.1
 iniconfig==2.0.0
 Jinja2==3.1.2
 MarkupSafe==2.1.2
 packaging==23.0
-pathspec==0.10.3
+pathspec==0.11.1
 pluggy==1.0.0
-Pygments==2.14.0
-pytest==7.2.1
+Pygments==2.15.0
+pytest==7.3.0
 PyYAML==6.0
-regex==2022.10.31
-sqlfluff==1.4.5
+regex==2023.3.23
+sqlfluff==2.0.3
 tblib==1.7.0
 toml==0.10.2
 tomli==2.0.1
-tqdm==4.64.1
-typing_extensions==4.4.0
+tqdm==4.65.0
+typing_extensions==4.5.0

dependencies/python/yamllint.txt

@@ -1,3 +1,3 @@
-pathspec==0.10.3
+pathspec==0.11.1
 PyYAML==6.0
-yamllint==1.29.0
+yamllint==1.30.0

dependencies/python/yq.txt

@@ -1,5 +1,5 @@
-argcomplete==2.0.0
+argcomplete==3.0.5
 PyYAML==6.0
-toml==0.10.2
+tomlkit==0.11.7
 xmltodict==0.13.0
-yq==3.1.0
+yq==3.2.1