feat: allow passing custom options to rust clippy (#6094)

Define the RUST_CLIPPY_COMMAND_OPTIONS variable to allow passing
arbitrary options to the command that runs RUST_CLIPPY.

Fix the ARM test case that just failed because of its apiVersion just
expired.

Close #4001

.devcontainer/devcontainer.json

@@ -9,6 +9,12 @@
         "editor.formatOnSaveMode": "file",
         "editor.wordWrap": "off",
         "prettier.resolveGlobalModules": true,
+        "[markdown]": {
+          "editor.wordWrap": "off"
+        },
+        "[shellscript]": {
+          "editor.defaultFormatter": "mkhl.shfmt"
+        },
         "[terraform]": {
           "editor.defaultFormatter": "hashicorp.terraform"
         },

Makefile

@@ -244,7 +244,7 @@ test-git-flags: ## Run super-linter with different git-related flags
 
 .PHONY: lint-codebase
 lint-codebase: ## Lint the entire codebase
-	docker run \
+	docker run $(DOCKER_FLAGS) \
 		-e CREATE_LOG_FILE=true \
 		-e RUN_LOCAL=true \
 		-e LOG_LEVEL=DEBUG \
@@ -263,7 +263,7 @@ lint-codebase: ## Lint the entire codebase
 # Return an error if there are changes to commit
 .PHONY: fix-codebase
 fix-codebase: ## Fix and format the entire codebase
-	docker run \
+	docker run $(DOCKER_FLAGS) \
 		-e CREATE_LOG_FILE=true \
 		-e DEFAULT_BRANCH=main \
 		-e ENABLE_GITHUB_ACTIONS_GROUP_TITLE=true \

README.md

@@ -297,6 +297,7 @@ You can configure Super-linter using the following environment variables:
 | **PYTHON_RUFF_CONFIG_FILE**                     | `.ruff.toml`                                                                 | Filename for [ruff configuration](https://docs.astral.sh/ruff/configuration/)                                                                                                                                                                                                                                                        |
 | **RENOVATE_SHAREABLE_CONFIG_PRESET_FILE_NAMES** | not set                                                                      | Comma-separated filenames for [renovate shareable config preset](https://docs.renovatebot.com/config-presets/) (ex: `default.json`)                                                                                                                                                                                                  |
 | **RUBY_CONFIG_FILE**                            | `.ruby-lint.yml`                                                             | Filename for [rubocop configuration](https://docs.rubocop.org/rubocop/configuration.html) (ex: `.ruby-lint.yml`, `.rubocop.yml`)                                                                                                                                                                                                     |
+| **RUST_CLIPPY_COMMAND_OPTIONS**                 | not set                                                                      | Additional options and arguments to pass to the command when running Clippy.                                                                                                                                                                                                                                                         |
 | **SAVE_SUPER_LINTER_OUTPUT**                    | `false`                                                                      | If set to `true`, Super-linter will save its output in the workspace. For more information, see [Super-linter outputs](#super-linter-outputs).                                                                                                                                                                                       |
 | **SAVE_SUPER_LINTER_SUMMARY**                   | `false`                                                                      | If set to `true`, Super-linter will save a summary. For more information, see [Summary outputs](#summary-outputs).                                                                                                                                                                                                                   |
 | **SCALAFMT_CONFIG_FILE**                        | `.scalafmt.conf`                                                             | Filename for [scalafmt configuration](https://scalameta.org/scalafmt/docs/configuration.html) (ex: `.scalafmt.conf`)                                                                                                                                                                                                                 |

lib/functions/linterCommands.sh

@@ -142,6 +142,10 @@ LINTER_COMMANDS_ARRAY_RUST_2015=(rustfmt --edition 2015)
 LINTER_COMMANDS_ARRAY_RUST_2018=(rustfmt --edition 2018)
 LINTER_COMMANDS_ARRAY_RUST_2021=(rustfmt --edition 2021)
 LINTER_COMMANDS_ARRAY_RUST_CLIPPY=(cargo clippy)
+if [ -n "${RUST_CLIPPY_COMMAND_OPTIONS:-}" ]; then
+  export RUST_CLIPPY_COMMAND_OPTIONS
+  AddOptionsToCommand "LINTER_COMMANDS_ARRAY_RUST_CLIPPY" "${RUST_CLIPPY_COMMAND_OPTIONS}"
+fi
 LINTER_COMMANDS_ARRAY_SCALAFMT=(scalafmt --config "${SCALAFMT_LINTER_RULES}")
 LINTER_COMMANDS_ARRAY_SHELL_SHFMT=(shfmt)
 LINTER_COMMANDS_ARRAY_SNAKEMAKE_LINT=(snakemake --lint -s)

test/lib/linterCommandsTest.sh

@@ -7,13 +7,6 @@ set -o pipefail
 # shellcheck source=/dev/null
 source "test/testUtils.sh"
 
-# Default log level
-# shellcheck disable=SC2034
-LOG_LEVEL="DEBUG"
-
-# shellcheck source=/dev/null
-source "lib/functions/log.sh"
-
 # linterCommands.sh needs these
 
 # shellcheck source=/dev/null
@@ -194,8 +187,18 @@ function InitInputConsumeCommandsTest() {
   EXPECTED_LINTER_COMMANDS_ARRAY_ANSIBLE=("${BASE_LINTER_COMMANDS_ARRAY_ANSIBLE[@]}" "${INPUT_CONSUME_COMMAND[@]}")
   # shellcheck disable=SC2034
   EXPECTED_LINTER_COMMANDS_ARRAY_GO_MODULES=("${BASE_LINTER_COMMANDS_ARRAY_GO_MODULES[@]}" "${INPUT_CONSUME_COMMAND[@]}")
+
+  # Add some custom options to the Rust command to ensure that they are added before the "input consume" command
   # shellcheck disable=SC2034
-  EXPECTED_LINTER_COMMANDS_ARRAY_RUST_CLIPPY=("${BASE_LINTER_COMMANDS_ARRAY_RUST_CLIPPY[@]}" "${INPUT_CONSUME_COMMAND[@]}")
+  local RUST_CLIPPY_COMMAND_OPTIONS_ARRAY=("--verbose --help")
+  RUST_CLIPPY_COMMAND_OPTIONS="${RUST_CLIPPY_COMMAND_OPTIONS_ARRAY[*]}"
+
+  # Source the file again so it accounts for modifications
+  # shellcheck source=/dev/null
+  source "lib/functions/linterCommands.sh"
+
+  # shellcheck disable=SC2034
+  EXPECTED_LINTER_COMMANDS_ARRAY_RUST_CLIPPY=("${BASE_LINTER_COMMANDS_ARRAY_RUST_CLIPPY[@]}" "${RUST_CLIPPY_COMMAND_OPTIONS_ARRAY[@]}" "${INPUT_CONSUME_COMMAND[@]}")
 
   if ! InitInputConsumeCommands; then
     fatal "Error while initializing GNU parallel input consume commands"
@@ -318,6 +321,8 @@ CommandOptionsTest() {
   KUBERNETES_KUBECONFORM_OPTIONS="-debug -verbose -v"
   # shellcheck disable=SC2034
   PERL_PERLCRITIC_OPTIONS="--gentle --count test/linters/perl/perl_good_1.pl"
+  # shellcheck disable=SC2034
+  RUST_CLIPPY_COMMAND_OPTIONS="--verbose --help"
 
   # Source the file again so it accounts for modifications
   # shellcheck source=/dev/null
@@ -327,6 +332,11 @@ CommandOptionsTest() {
   "${LINTER_COMMANDS_ARRAY_GITHUB_ACTIONS[@]}"
   "${LINTER_COMMANDS_ARRAY_KUBERNETES_KUBECONFORM[@]}"
   "${LINTER_COMMANDS_ARRAY_PERL[@]}"
+  # Rust Clippy is only available in the standard image, so we can't run it when
+  # testing the slim image
+  if IsStandardImage; then
+    "${LINTER_COMMANDS_ARRAY_RUST_CLIPPY[@]}"
+  fi
 
   notice "${FUNCTION_NAME} PASS"
 }
@@ -348,6 +358,14 @@ AddOptionsToCommandTest() {
   AddOptionsToCommand "TEST_LINTER_COMMANDS_ARRAY_PERL" "--gentle --count test/linters/perl/perl_good_1.pl"
   "${TEST_LINTER_COMMANDS_ARRAY_PERL[@]}"
 
+  # Rust Clippy is only available in the standard image, so we can't run it when
+  # testing the slim image
+  if IsStandardImage; then
+    local TEST_LINTER_COMMANDS_ARRAY_RUST_CLIPPY=("${BASE_LINTER_COMMANDS_ARRAY_RUST_CLIPPY[@]}")
+    AddOptionsToCommand "TEST_LINTER_COMMANDS_ARRAY_RUST_CLIPPY" "--verbose --help"
+    "${TEST_LINTER_COMMANDS_ARRAY_RUST_CLIPPY[@]}"
+  fi
+
   notice "${FUNCTION_NAME} PASS"
 }
 

test/linters/arm/arm_good_1.json

@@ -22,7 +22,7 @@
   "resources": [
     {
       "type": "Microsoft.Storage/storageAccounts",
-      "apiVersion": "2022-09-01",
+      "apiVersion": "2023-01-01",
       "name": "[concat('store', uniquestring(resourceGroup().id))]",
       "location": "[parameters('location')]",
       "kind": "StorageV2",

test/testUtils.sh

@@ -158,6 +158,16 @@ IsLanguageInSlimImage() {
   fi
 }
 
+IsStandardImage() {
+  if [[ "${IMAGE}" == "standard" ]]; then
+    debug "This is the standard image"
+    return 0
+  else
+    debug "This isn't the standard image"
+    return 1
+  fi
+}
+
 RemoveTestLeftovers() {
   local LEFTOVERS_TO_CLEAN=()
   LEFTOVERS_TO_CLEAN+=("${SUPER_LINTER_WORKSPACE}/${LINTERS_TEST_CASE_DIRECTORY}/rust_clippy/bad/target")